| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4117 |
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| Symbol | |
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| ID | 3973167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4578405 |
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| End bp | 4579238 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637927221 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_533962 |
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| Protein GI | 90425592 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.363839 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGGA TCAAGGCCGC CTGCCTGATC GGCTGGCCCG CGGCGCATTC CCGCTCGCCG
ATGATTCATC ATTACTGGCT GCGCACGCTC GGCATCGAGG GCGGCTACGC CATCGAATCG
GTGCCGCCGG AAGGTTTTGG CGAGTTCGTG CTGCATCTGT CGACGCACGG CTATCTCGGC
GCCAACGTCA CCATCCCGCA CAAGGAGCGC GCGCTACTCT TGACCGAGCC GGACGCCCGC
GCCCGTGCGG TCGGCGCTGC CAATACGCTG TGGTATGATG GTGAGACGCT GCGTTCGACC
AATACCGATA TCGAAGGCTT CCTCAACAAT CTCGACGCCT GCGCGCCGGG CTGGGACGGA
ATCGACGAGG CGCTGGTGCT CGGCGCCGGC GGTTCGTCGC GCGCCGTGGT GTTCGGGCTG
ATCGAGCGCG GCATCAAGCG CATCCATCTC GCCAACCGCA CGCTGGACCG CGCCCAGGCG
GTGGCCGATC AATTCAACGC CGACGTGGTG CCGACCGCCT GGCAGGATCT CGCCGCGGTG
TTGCCGCGGG CGAAACTGCT GGTCAACACC ACCTCGCTCG GCATGAAGGG CCAGCCGGCG
CTCGAGGTCG ACATCGGCTT GTTGCCGACG GACGCCGCGG TCGCCGATCT GGTCTATGTG
CCGCTCGAGA CGCCGCTGCT CGCCGCCGCC CGCGCCCGCG GCCTCGCCAC CGCCGACGGC
CTCGGCATGC TGCTGCACCA GGCGGTGCGC GGCTTCGAAT TGTGGTTCGG CACCAGGCCT
TCGGTAACGC CCGAACTGCG CGCGCTGATC GAGGCGGATC TGGCGCCGGC GTAG
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| Protein sequence | MTRIKAACLI GWPAAHSRSP MIHHYWLRTL GIEGGYAIES VPPEGFGEFV LHLSTHGYLG
ANVTIPHKER ALLLTEPDAR ARAVGAANTL WYDGETLRST NTDIEGFLNN LDACAPGWDG
IDEALVLGAG GSSRAVVFGL IERGIKRIHL ANRTLDRAQA VADQFNADVV PTAWQDLAAV
LPRAKLLVNT TSLGMKGQPA LEVDIGLLPT DAAVADLVYV PLETPLLAAA RARGLATADG
LGMLLHQAVR GFELWFGTRP SVTPELRALI EADLAPA
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