Gene RPC_3944 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3944 
Symbol 
ID3969329 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4394093 
End bp4394464 
Gene Length372 bp 
Protein Length123 aa 
Translation table11 
GC content62% 
IMG OID637927048 
ProductPilT protein 
Protein accessionYP_533789 
Protein GI90425419 
COG category[S] Function unknown 
COG ID[COG3742] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00101332 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATAGTT CGACGGTGAT TGCGATCTTC CGGCAGGAAC AGGACGCCGC GCAATTTGCG 
CGACGCATCG CCGAAGACGA CCAGCCAATG ATGTCCGCCG CCAATCTGGT CGAAACCTCG
ATTGTACTGC GCGGGCTCAA GGACATCGCG CCGGCCAAGG CCGAACGATG GCTAGACGAC
TTCATCGCCG CGGCCGGGAT CAGGATCGAG CCGGTCACGG CCGACCAGGC GCAGCTCGCA
CGCTCAGCAC ATCTGCGGTT CGGCAAAGGG ACTGAACATC GCGCAGCGCT GAACTACGGC
GACTGCTTCG CCGATGGTCT GGCAAAAGCC ATGGACGCCC CTTGCTATGC AAGGGTAACG
ACTTTCCGTT GA
 
Protein sequence
MDSSTVIAIF RQEQDAAQFA RRIAEDDQPM MSAANLVETS IVLRGLKDIA PAKAERWLDD 
FIAAAGIRIE PVTADQAQLA RSAHLRFGKG TEHRAALNYG DCFADGLAKA MDAPCYARVT
TFR