Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3919 |
Symbol | |
ID | 3969185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4347217 |
End bp | 4351596 |
Gene Length | 4380 bp |
Protein Length | 1459 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927022 |
Product | methylase/helicase |
Protein accession | YP_533764 |
Protein GI | 90425394 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCAT CTTCTTCCTC CACGGTCCTG GCCGCGACCG TACGATCTTC CACGTCGCTA GACAGTGGCG ATGCCGCCGT CCGAATCATT GCCGCTGCAC GCTTGATCCT TCCGCAACTC AAGCGTGGCC ACCGCATTGA CGCCGCGGGC CTGCGCGTCG CGATGGAGAC GGCCTATTCC GGTTCTGACG CCGACGGCGC TTGGGACTGG AAGTCTGCCT ACGACGCTTG CGAAGCGGCG ACCGTCCTGT TCCTGCGCAA ATTCGGTCCG GCGATGCGGA TGCGCGCCGC ATCACCCGAT GCCATGCTGC CGATGCTGGT GAAAATTGCG GGCCTCCTTC CCACCCACAC GCGACGGTCC GAAGAGAGCG AGGCGCTTCA GCAATTCAGT ACACCGATCG CTCTCGGACT TGCGGCTTCC GCCGCGGCGG CAATCACCAC CTCGGACATC GTCCTGGAGC CATCGGCCGG AACTGGGCTG CTCGCTATTC TTGCCGAATT GTCCGGCGCT GCCCTCGTTT TGAACGAGTT GGCCGAGACC CGTGCCGGCT TGCTCGCGCT GCTTTTCCCA GAACTCGCCG TGACCCGCTT CGACGCCGCG CAGATCGACG ATCACCTCCA TGCCGGGATC ACGCCGAGCG TTGTGCTAAT GAACTCGCCA TTTTCCGCCG TGGCCAATGT GGATCGCCGC ATGAGCGATG CAGCGTTGCG TCATATCTCG TCTGCACTGG TGCGGCTGGC GGCTGGCGGC CGCCTGGTTG CCATCACCGG TGCCAATTGC GGGCCCGACA ATCCGACATG GCGTGACGCC TTTATCAGCC TGCAGCAGCA TGGGCAGGTG GTGTTTTCCG CGCCGATCGA CGGCGCGGTC TATGCCCGGC ATGGCACAAC CATGGACACC CGGTTGACCG TGATCGACAA ACGGGCCGCC GAGGATCCCC GCGCATTTCC GGAGTCTCCG GGCGTAGCGC CAGATGTAGC CACGCTGCTC GGCTGGATCG CGCAATCCGT GCCGCCACGG CCGCCCCTTG CGCTGACGCC GACAACTTCC TCGATCGTCC GATCGGTGCC GAGTATTGAT CGCGCGCGGA AGCCGGTCGT CGCCAGGCCC TTCTCTCTCC CCGCCAAACC TCACGAACCG GAGGGGATCG AACTCGCCTA TCAAACCGTC GACTGGAAGC CGGTCGAGGG CGGCGGTATC ACCGATGCGC TGTATGAAGC CTACAGCTTG CAGTCGATCC GAATTGCCGG CGCGCAGGCT CATCCGACCA GGCTGGTGCA ATCGGCGGCG ATGGCCTCGG TGGCGCCGCC GAAGCCGAGC TATCGTCCGC ATCTTCCTGC TGATGTCATC GAACGCGGCG TCTTGTCGGA TGCCCAGCTG GAGACGGTGG TCTATGCCGG CGAAGCCAAT TCACAGTTCC TCGCAGGATC CTGGAGCGTT GACGAGACTT TCGACATTGT CGCGGCCGCG CGCGACGACG CCGAGACCGC GGTGCGGTTT CGCCTGGGCT TCATGCTTGG CGACGGCACC GGCGCCGGCA AGGGCCGGCA GGTCGCGGGT ATCCTGCTCG ACAATTGGCT GAAAGGGCGC CGCAAGGCGG TCTGGATCAG CAAGTCCGAC AAGCTGATCG AGGATGCCCA GCGTGATTGG TCGGCGCTCG GACAGGAACG GCTGCTGGTG ACACCGCTGT CGCGCTTTCG CCAGGGCACC CCGATCCGTC TCGCGCAAGG CATCCTTTTT ACGACCTACG CCACGCTGCG CTCCGACGCT CGTGACGACA AGATATCGCG GGTGAAACAG ATCGTGGAAT GGTTGGGCGC CGACGCAGGC TCTGAGGCCG GGGCGGGTTT CGACGGCGTG ATCATTTTTG ACGAGTCTCA CGCGATGCAG AATGCTGCGG GCGGCAAAGG CGAACGCGGC GATCAGGCCG CCTCGCAGCA GGGCCGCGCC GGTCTCCGAT TGCAACATGC GGTGCCCAAT GCGCGCATCG TTTACGTCTC GGCGACCGGT GCCACCACGG TTCATAACCT CGCCTATGCG CAGCGCCTCG GGCTCTGGGG CGGCGACGAC TTTCCTTTCG CCACCCGCGC GGAATTCGTC GAGGCGATCG AGGCCGGCGG TGTCGCGGCG ATGGAAGTGC TGGCCCGCGA TCTGAAGGCG CTCGGGCTCT ATGCGGCGCG GTCGCTGTCC TATGAGGGAG TGGAATACCA ACTGGTCGAG CACCGGCTCA CCGAGGAGCA GATCCGCATC TATGACGCCT ATGCGAGCGG CTTCAGCATC ATCCACAACA ACCTCGATGC CGCGCTACGG GCGGCCAACG TCACCGGCAC CACCGGCACG CTGAACGCGC AGGCCAAGTC CGCCGCGAGA TCCGCATTCG AATCCGCCAA GCAGCGGTTC TTTAATCACT TGATCACCGC GATGAAGGTG CCGTCGCTGA TCGCGTCGGT CGAACGGGAT CTGAGCGACG GCCACGCCGC CGTGATTCAG ATCGTCTCGA CCGGTGAGGC GCTGATGGAG CGCCGGCTTG CGGAAATTCC CACCGAGGAA TGGGGCGATG TTCAGGTCGA CATCACGCCG CGAGAATATG TGCTCGATTA TCTGGCTCAT TCATTCCCGA CCCAACTCTA CGAGCCGTTC ACCGACAGCG AAGGCAATCT GTCGTCTCGG CCGGTGTTTC GGGATGGCCA ACCGGTGCAA TGCCGGGACG CGGTCGCGCG GCGAGACCGA TTGATCGAAC ATCTGGCCTC GCTGCCGGGT GTGCATGGTG CACTCGATCA GATCGTGCAG CGCTTTGGCA CCGACACGGT TGCGGAGGTG ACAGGACGTT CCCGGCGCAT CATCCGCAAG ACCAACGCCG ATGGTACAGG TCGCCTTGCC GTGGAGAACC GCGCCGGCTC CGCCAATCTC GGCGAGGCGC AGGCGTTCAT GGATGATCTC AAACGCATCC TGGTGTTCTC GGAAGCTGGC GGTACCGGGC GCTCCTATCA TGCGGAGCTG TCGGCCAGTA ACCGGCGCCT GCGGGTGCAT TATCTGTTGG AAGCCGGATG GAAGGCCGAT GCGGCGATCC AGGGGCTCGG CCGCACCAAT CGTACCAATC AGGCGCAGCC GCCGCTGTTC CGGCCGATCG CCACCAATGT GAAAGCGGAG AAGCGCTTTC TCTCGACCAT TGCGCGGCGG CTCGACACGC TGGGCGCCAT CACCAAGGGC CAGCGCCAGA CCGGCGGGCA GGGCCTGTTC CGCGCCGAGG ACAATCTTGA AAGCCATTAT GCCCGCGACG CCCTGCGGCA ACTGTATCTG CTGCTGGTCA ATGGCAAGAT TGCGGATTGT TCGCTGCAAG CGTTCGAGGA CGCCACCGGG CTGAAGCTGA CTGATAGCAA CGGGATCAAG GACGATCTGC CGCCGATCAC CACCTTCCTG AATCGGCTGT TGGCGCTGAC AATCGATCTG CAGAACATTC TGTTTGCCGC GTTCGAGCAA TTGCTGACCG CGCGCGTCGA GGGCGCGATC GCCTCCGGCA GCTATGACGT CGGCCTGGAA ACTCTGACCG CCGAGAGTTT TGCCGTCACC GGCCGGCAGA CGATCTACCC CCATCCCGGC ACCTCGACTG AGACCAGTCT GCTGACGATC ACCCAGCGCG AGCGTAACCG GCCGGTCACG CTCGACGAGG CATTGGAGCG CCTCTCCGAT CCGCGCGCGC GTCTTCTGGT CAACAGCCAA TCGGGGCGTG CCGCGGTGCA GGTTCCGGCA CGTAGCATCA TGCTGGACGA CGGCGAGGTG GAACGCCTGG TCCGGCTGAT CCGGCCGATC GAGCATCCGA CGTTGCCGCT GGCTTTGATG CCGCAGACCC ATTGGCAGGA AGCCGATCGG GAATTCTTTG CGCGCGCCTG GGAAGCAGAA GTGGCTGATG TGCCGGAATT TACCTGCAGC GAGATCCACA TCGTTGCCGG GCTGCTGTTG CCGATCTGGA AGCGGTTGCC GAACGAGTCG ACGCGTGTCT ACCGGCTCCA GACCGACACC GGCCAACGCA TCATCGGCCG CAAGGTGTCA CCCGCCTGGG CGGCGACCGC GACCGATGTG GGTCTATCGA CCATCACCCC CGATGCTGCG TTTGCGGCAC TGCTCGATGG CAAGACGATC ATTGATCTCG CTGAATCTTT GCAGCTTCGG CGTGTCCGCG TGATGGGTGC AAACCGGATC GAGCTGAACG GCTTCTCCGA GGCGATGCGC GACCGGCTGC GCGCCTACGG CCTGTTCAGC GAGATCATTT CCTGGAAGCT GCGCTTCTTC GTGCCGGTCG ACGCGACCGG CCCGGCGGTG CTGGCCAAAG TGCTGGAGCA CTATCCGGTG CTCCGGGTCG CCGATCGGAC GGCGGCGTGA
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Protein sequence | MTPSSSSTVL AATVRSSTSL DSGDAAVRII AAARLILPQL KRGHRIDAAG LRVAMETAYS GSDADGAWDW KSAYDACEAA TVLFLRKFGP AMRMRAASPD AMLPMLVKIA GLLPTHTRRS EESEALQQFS TPIALGLAAS AAAAITTSDI VLEPSAGTGL LAILAELSGA ALVLNELAET RAGLLALLFP ELAVTRFDAA QIDDHLHAGI TPSVVLMNSP FSAVANVDRR MSDAALRHIS SALVRLAAGG RLVAITGANC GPDNPTWRDA FISLQQHGQV VFSAPIDGAV YARHGTTMDT RLTVIDKRAA EDPRAFPESP GVAPDVATLL GWIAQSVPPR PPLALTPTTS SIVRSVPSID RARKPVVARP FSLPAKPHEP EGIELAYQTV DWKPVEGGGI TDALYEAYSL QSIRIAGAQA HPTRLVQSAA MASVAPPKPS YRPHLPADVI ERGVLSDAQL ETVVYAGEAN SQFLAGSWSV DETFDIVAAA RDDAETAVRF RLGFMLGDGT GAGKGRQVAG ILLDNWLKGR RKAVWISKSD KLIEDAQRDW SALGQERLLV TPLSRFRQGT PIRLAQGILF TTYATLRSDA RDDKISRVKQ IVEWLGADAG SEAGAGFDGV IIFDESHAMQ NAAGGKGERG DQAASQQGRA GLRLQHAVPN ARIVYVSATG ATTVHNLAYA QRLGLWGGDD FPFATRAEFV EAIEAGGVAA MEVLARDLKA LGLYAARSLS YEGVEYQLVE HRLTEEQIRI YDAYASGFSI IHNNLDAALR AANVTGTTGT LNAQAKSAAR SAFESAKQRF FNHLITAMKV PSLIASVERD LSDGHAAVIQ IVSTGEALME RRLAEIPTEE WGDVQVDITP REYVLDYLAH SFPTQLYEPF TDSEGNLSSR PVFRDGQPVQ CRDAVARRDR LIEHLASLPG VHGALDQIVQ RFGTDTVAEV TGRSRRIIRK TNADGTGRLA VENRAGSANL GEAQAFMDDL KRILVFSEAG GTGRSYHAEL SASNRRLRVH YLLEAGWKAD AAIQGLGRTN RTNQAQPPLF RPIATNVKAE KRFLSTIARR LDTLGAITKG QRQTGGQGLF RAEDNLESHY ARDALRQLYL LLVNGKIADC SLQAFEDATG LKLTDSNGIK DDLPPITTFL NRLLALTIDL QNILFAAFEQ LLTARVEGAI ASGSYDVGLE TLTAESFAVT GRQTIYPHPG TSTETSLLTI TQRERNRPVT LDEALERLSD PRARLLVNSQ SGRAAVQVPA RSIMLDDGEV ERLVRLIRPI EHPTLPLALM PQTHWQEADR EFFARAWEAE VADVPEFTCS EIHIVAGLLL PIWKRLPNES TRVYRLQTDT GQRIIGRKVS PAWAATATDV GLSTITPDAA FAALLDGKTI IDLAESLQLR RVRVMGANRI ELNGFSEAMR DRLRAYGLFS EIISWKLRFF VPVDATGPAV LAKVLEHYPV LRVADRTAA
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