Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3903 |
Symbol | |
ID | 3969266 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4332509 |
End bp | 4334506 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927006 |
Product | conjugal transfer coupling protein TraG |
Protein accession | YP_533748 |
Protein GI | 90425378 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.342715 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTCCGCCA CCAAGATCCT CTGGGGTCAG ATCATCGTCG TCTTCGCGGT CGTCCTCATC ACCATGTGGG CGGCGACGCA ATGGGTCGCG TGGAAGCTTG GCTTCCAGCC GCAACTCGGA CAGCCCTGGT TTGAGCTGCT GCCCGGTGTT CCGGTCTATC TTCCTCCGGC GTTTTTCTGG TGGTGGTACG CCTACGACGC CTATGCGCCT GACGTGTTCG TCGAGGGGGC TTACATCGCG GCGTCAGGTG GGTTCCTGGC GATTGCGGTT GCGATCGGCA TGTCGGTGTG GCGCGCTCGT GAGGTGAAGA TTGCCGCCAC CTATGGCTCG GCGCGCTGGG CGTCGCTGCC TGAGCTTCGT GCCGCCGGTC TCACCGGGCC GGACGGTGTC GTGCTCGGCC GGTTCGAGCA GGACTATTTG CGTCACGATG GTCCGGAACA TGTGCTGTGT TTTGCGCCGA CCCGGTCCGG CAAGGGCGTC GGTCTGGTGG TGCCCACGCT TCTGACGTGG CCGGGCTCAT GCATCGTCCA TGACATCAAG GGCGAGAACT GGACACTGAC GTCGGGCTAT CGGGCCCGGC ATGGCCGGGT GTTGCTTTTC GATCCGACCA ATTCGAGGTC GGCGGCCTAC AACCCGCTGC TCGAGGTTCG CCGCGGCGAG TGGGAGGTCC GCGACGTCCA GAATGTCGCC GATGTGCTGG TTGACCCCGA GGGCTCGCTG GAGCGGCGCA ACCATTGGGA AAAGACCAGC CATGCTCTGC TGGTCGGCGC AATTCTTCAC GTGCTCTATG CCGAACCGGA CAAGACGCTC GCCGGTGTTG CCGGCTTTCT GTCCCATCCG AAGCGGCCGA TCGAGGCAAC GCTACGGGCG ATGATGACGT CGGCGCATCT TGGGGAGGCG GGTCCGCATC CGGTGATCGC ATCTGCCGCT CGCGAGCTCC TCAACAAGAG CGAGAATGAA CGATCCGGCG TGCTCTCGAC CGCGATGTCG TTCCTTGGTC TCTACCGCGA TCCGGTGGTG GCGAAGGTGA CGCAGCATTG CGACTGGCGC ATCAGTGATC TGGTCGAGGG CGAGCGTCCC GTCACGCTCT ACCTGGTGGT GCCGCCATCC GACATCAGCC GGACCAAACC GTTGGTGCGG CTGATCCTCA ACCAGATCGG CCGTAGGCTC ACCGAAGATC TGCATCCGAA AGGGCGGCGG CATCGATTGC TGCTGATGTT GGACGAATTT CCGGCGCTGG GCCGGTTGGA TTTCTTCGAG TCGGCGTTGG CCTTCATGGC CGGTTATGGG CTGAAAAGCT TTCTGATTGC GCAGTCGCTC AATCAGATCG AAAAGGCCTA CGGGCCCAAC AACGCCATTT TGGACAATTG CCACGTCCGG GTCTCGTTTG CCACCAACGA CGAGCGCACC GCCAAGCGGG TGTCGGATGC GCTTGGCACC GCGACCGAGA TGCGGGCGAT GAAGAACTAT GCCGGGCACA GGCTCAGTCC CTGGCTCGGT CATCTGATGG TGTCGCGGCA GGAGACAGCA CGACCACTGC TGACGCCCGG CGAGGTGATG CAACTGCCGC CCAGCGATGA ATTGGTGCTG ATCTCAGGTT GTCCGCCGAT CCGGGCCAAG AAGGCGCGCT ACTTCGAAGA TCCAAGATTG ACCGAGCGGA TCCTGACGCC GCCGTTGCTG GAGGCAAAGC AGGGCAGTAC GAAGCCAGAC GATGACTGGT GCCGATTGCC ATCTCCCGCG GCAGGCCGTG ACGGTCGGAT TTCCGACGCG CCGGGAGACG ATTCCACGGG TGATCCCGCC AACGCCGGCA TCCGCCGGGA ACCAGAGCTT CCCGACCACG AGGAAATTGC CCCGGAGCGA GCGACCCCGC CACCTGAGTT TGGGTTTGTC GAAGACGAGC CCGACGACGA AGCAGCCCGT GCCCGTGCAT TGCGTCGGCA GGTTCGTGGG CTTGCACGCC AGGCCGCGAT GGATCCCGGC GATGGTATCG AACTCTAG
|
Protein sequence | MSATKILWGQ IIVVFAVVLI TMWAATQWVA WKLGFQPQLG QPWFELLPGV PVYLPPAFFW WWYAYDAYAP DVFVEGAYIA ASGGFLAIAV AIGMSVWRAR EVKIAATYGS ARWASLPELR AAGLTGPDGV VLGRFEQDYL RHDGPEHVLC FAPTRSGKGV GLVVPTLLTW PGSCIVHDIK GENWTLTSGY RARHGRVLLF DPTNSRSAAY NPLLEVRRGE WEVRDVQNVA DVLVDPEGSL ERRNHWEKTS HALLVGAILH VLYAEPDKTL AGVAGFLSHP KRPIEATLRA MMTSAHLGEA GPHPVIASAA RELLNKSENE RSGVLSTAMS FLGLYRDPVV AKVTQHCDWR ISDLVEGERP VTLYLVVPPS DISRTKPLVR LILNQIGRRL TEDLHPKGRR HRLLLMLDEF PALGRLDFFE SALAFMAGYG LKSFLIAQSL NQIEKAYGPN NAILDNCHVR VSFATNDERT AKRVSDALGT ATEMRAMKNY AGHRLSPWLG HLMVSRQETA RPLLTPGEVM QLPPSDELVL ISGCPPIRAK KARYFEDPRL TERILTPPLL EAKQGSTKPD DDWCRLPSPA AGRDGRISDA PGDDSTGDPA NAGIRREPEL PDHEEIAPER ATPPPEFGFV EDEPDDEAAR ARALRRQVRG LARQAAMDPG DGIEL
|
| |