| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3897 |
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| Symbol | |
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| ID | 3969260 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4327147 |
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| End bp | 4327884 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637927000 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_533742 |
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| Protein GI | 90425372 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.227906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCAGAA TCCGTAACCT CGTCACGGCG AGCGCCATAG CTCTGACCAT TGCGACCGTA
CCAGTGCCAT CCCGGGCGCA GGTAGTGGTG TTCGATCCAA ACAACTACGT CCAGAATGTG
CTGACGGCGG CGCGCGCGCT GCAACAGATC AACAACCAGA TCACCTCGCT GCAGAATCAG
GCGCAGATGT TGATCAATCA GGCGAGGAAT CTGGCCAGCC TGCCATATTC GTCGTTGCAG
CAACTGCAAT CGTCGATCCA GCGCACTCAA CAGCTTCTCG TGCAGGCGCA ACGCATCGCC
TACGACGTCC AGCAGATCGA CCGGGCGTTT ACGACTACCT ACGCGCCGGC ATCGGCCGGC
ACATCAAGCC AGGCGCTGAT CGGCAATGCG CAGCAGCGCT GGCAGACCTC TCTCGCAGCC
TTGCAGGATG CGCTGCGGGT CCAGGCCGGC GTCGTCGGCA ATCTCGATAC CCATCGCAGC
GAGATGTCGG CGCTGGTGAC GTCGAGCCAG TCCGCGACCG GAGCGCTGCA GGCGGCCCAG
GCCGGCAACC AGCTGATCGC GTTGCAGGGC CAGCAACTCG CGGATCTGAC CGCGACCGTC
GCAGCTCAAG GACGGGCCGC GAGCCTGGAT GCCGCCCAAC GCAGCGCCGC GCAGGACCAG
GGTAGGGAGC AGCTCCGCCG CTTCCTGACC CCTGGCGCCG GCTACCAGCC CAGCAACGTT
CAGATGTTCC ACCAATGA
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| Protein sequence | MIRIRNLVTA SAIALTIATV PVPSRAQVVV FDPNNYVQNV LTAARALQQI NNQITSLQNQ
AQMLINQARN LASLPYSSLQ QLQSSIQRTQ QLLVQAQRIA YDVQQIDRAF TTTYAPASAG
TSSQALIGNA QQRWQTSLAA LQDALRVQAG VVGNLDTHRS EMSALVTSSQ SATGALQAAQ
AGNQLIALQG QQLADLTATV AAQGRAASLD AAQRSAAQDQ GREQLRRFLT PGAGYQPSNV
QMFHQ
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