Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3895 |
Symbol | |
ID | 3969258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4325613 |
End bp | 4326785 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637926998 |
Product | conjugal transfer protein TrbL |
Protein accession | YP_533740 |
Protein GI | 90425370 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3846] Type IV secretory pathway, TrbL components |
TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.261118 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGGGGCA CCGGGGTTAT CGATCGCTTT CTCGAGGTCT TTACCCGTTT CATTGATTCG GGCTTTGGCT TGCTCAATGG CGAAGTGGCG TTTCTGGCCA CCACGCTGGC CGCAATCGAC ATCACGCTCG CGGCGATCTT CTGGAGCTGG GCAGCCGACG AGGACATCAT TGCCCGGCTC GCAAAGAAGA CGCTGTTCGT CGGCGTGTTC GCCTACCTGA TCGGCAATTG GAATAGCCTC GCCCGCATTG TTTTCGAGAG TCTTGCAGGA CTAGGACTGA AGGCGTCCGG CACCGGGATG TCGATGGCCG ATCTGCTCAG GCCCGGCCGG GTCGCCCAGG TCGGCATCGA TGCCGGACGA CCGATCCTGG ACTCGATCTC GGGTCTGTTG GGCTACATCA GCTTCTTTGA GAATTTTGTT CAGATTGTCG TGTTGCTGTT CGCCTGGATC GTGGTGCTGC TCGCCTTCTT CATCCTGGCG ATCCAGCTGT TCGTGACCCT GATCGAGTTC AAGCTGACGA CGCTCGCGGG TTTCGTGCTG ATCCCATTCG GCCTGTTCGG CAAGACCGCA TTTGCCGCCG AACGCGTGCT TGGCAACGTC ATCTCATCCG GCATCAAGGT GCTGGTTCTC GCCGTCATTG TCGGCATCGG CACCACGCTG TTCTCGCAAT TCACCGCTGG ATTCGGCGGC AACCAGCCGA CCATCGAGGA TGCTCTGACG CTGGTGCTCG CCGCATTGTC GTTGCTGGGC CTCGGCATTT TTGGTCCGGG GATCGCCAAC GGCATTGTGT CGGGAGGTCC GCAGCTCGGC GCAGGTGCGG CGGTTGGGAC CGGTCTTGCG GCGGGCGGCA TCGTCGCTGC CGGTGCGGCT GGGGCGACGA TGGCTGCCGG GGCCGCTGGC GGCGTTCTTG CCGGCGGTGC GCGTGGTGCC GCCACTTTGA TGCAGGCGGG TGGCTCAACC ATCGCCAGCC CGCTGCGCCG AAGCGCAGCC GATCAATCAG GGCAGGGAGC AGCGTCGCCA GGTTCGCCGT CTGGCGGTGA ACCGGCGTGG GCCACCCGCA TGAAGCGCTC GCAAACCGTC GGCCACGGGG CTTCCGCCGC GGTCCATGCG GTCCGTTCCG GTGATCATGG CGGCGGCGGC GCGTCGGTCG ATGTTTCCGA GGGGAAAAGC TGA
|
Protein sequence | MGGTGVIDRF LEVFTRFIDS GFGLLNGEVA FLATTLAAID ITLAAIFWSW AADEDIIARL AKKTLFVGVF AYLIGNWNSL ARIVFESLAG LGLKASGTGM SMADLLRPGR VAQVGIDAGR PILDSISGLL GYISFFENFV QIVVLLFAWI VVLLAFFILA IQLFVTLIEF KLTTLAGFVL IPFGLFGKTA FAAERVLGNV ISSGIKVLVL AVIVGIGTTL FSQFTAGFGG NQPTIEDALT LVLAALSLLG LGIFGPGIAN GIVSGGPQLG AGAAVGTGLA AGGIVAAGAA GATMAAGAAG GVLAGGARGA ATLMQAGGST IASPLRRSAA DQSGQGAASP GSPSGGEPAW ATRMKRSQTV GHGASAAVHA VRSGDHGGGG ASVDVSEGKS
|
| |