Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_3676 |
Symbol | |
ID | 3969613 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4090514 |
End bp | 4092316 |
Gene Length | 1803 bp |
Protein Length | 600 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637926786 |
Product | glycoside hydrolase 15-related |
Protein accession | YP_533530 |
Protein GI | 90425160 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCTGCAC GAATCGAAGA TTATGCACTG ATCGGCGATT GCGAAACCGC AGCCTTGGTC GGCCGCGATG GCTCGATCGA CTGGCTGTGC TGGCCGTCGT TCGATTCGGA GGCCTGCTTT GCCGCGTTGC TCGGCAGCAA TCAGCACGGC CGCTGGCAGA TCGCACCGGC CGACGCGATC ACCGCCAGCT CGCGGCGCTA CCGTGGCGAC ACGCTGATCC TGGAAACCCG GCTGCAGACC GCGACCGGCG TTGTCACCCT GATCGACTTC ATGCCGCCGC GCGGCAGCGC GTCCGACGTC GTGCGCTTGG TACGCGGCGA GCAGGGCCGC GTGAAGCTGC GCATGGAGCT GGTGATCCGC TTCGGCTTCG GCGTCAACAT TCCATGGGTG AAACGCACCG ACGGCGGCGC GCTGCTGGCG ATCTGCGGTC CCGACATGGC GGTGCTGCGC AGCTCGGTCG AGACCCACGG CGAGGCCATG ACCACGGTGT CGGAGTTCGA GGTCGCGGCC GGCGAGACCG CATCGTTCGT GCTGGCCTAT GCGGCGTCGC ATTTGGCGGT GCCGGAACCG ATCGACGCCG AGCAGGCGCT CGCCGACACC GAACAATTCT GGGCGGAGTG GTCGGGCCGC TGCACCTATC ACGGCGGCGA CCGCGACCTG GTGATGCGCT CCTTGATCAC GCTGAAGGCG CTGACCTTCG CGCCGAGCGG CGGCATCGTC GCGGCCCCCA CCACTTCGCT GCCGGAGAAA CTCGGCGGCG CCCGCAATTG GGACTATCGC TATTGCTGGC TGCGCGACGC CACCTTCACG CTGCTGGCGC TGATCAATTC CGGCTACACC GAGGAGGCCT CGGCCTGGCA CAATTGGCTG TTGCGCGCGG TGGCCGGCGC GCCGGCCGAC ATGCAGATCA TGTACGGCAT CATGGGGCAG CGCCGGCTGC TGGAATGGCA GGCCGACTGG CTGCCGGGCT ATGAGGGCGC TGCGCCGGTG CGGATCGGCA ACGCCGCGCA CGCGCAATTG CAGCTCGACG TCTATGGCGA GCTGATCGAC GCGTTCCATC AGTGGCGGGT GGCGGACATC ATGCTCGATG GCGAGTCGTG GTCGCTGGAA TGCGCTGTGC TGGAGCATCT TGCGAAGATC TGGAACGAGC CCGATAGCGG CATCTGGGAG CTCCGCGGCC CCGGCCGGCA CTACGTCTCC TCAAAGGTGA TGACCTGGGT GGCGTTCGAC CGCGGCATCA AGAGCGCGGA AATGTTCGGC CTCGACGGAC CGCTCGCGCA ATGGCGGGCG CTACGCGACG AGATCCATCG CGACATCTGC GCCAACGGCT TCGACAAAGA GCAGAACTGC TTCGTGGTGT CCTACGGCGC CAAGATGCTG GACGCGTCGA TCCTGCTGTT GCCCTCGGTC GGTTTCCTGC CGGCGTCGGA TCCGCGGGTG CAGGGCACGC TCAAAGCGAT CGAGCGGCAT CTGATGCGCG ACGGCTTCGT GCTGCGCCAC GATCCGCGCG AGGTGACGGA TGAAAAGCAG CCGATCGAGG GTGCGTTCCT GGCCTGCAGC CTGTGGCTGG CCGACGCCTA TCTGCTGGCC GGCGAAATCG GCAAGGCGAA GGCGCTGTTC GACCGCGTCG CCGCGGTGGC CAACGATGTC GGCTTGCTCG CCGAAGAATA TGATTCCGAA GCCAAGCGGC AGACCGGCAA TTTCCCGCAG GCGCTGACCC ACATCGCGCT GATCAACACC GCGCAGAATC TGTCGGCCGT GCAGCAGCCC GCCGACAAGC CGGTGACGCA GCGCGCGAAG TAA
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Protein sequence | MPARIEDYAL IGDCETAALV GRDGSIDWLC WPSFDSEACF AALLGSNQHG RWQIAPADAI TASSRRYRGD TLILETRLQT ATGVVTLIDF MPPRGSASDV VRLVRGEQGR VKLRMELVIR FGFGVNIPWV KRTDGGALLA ICGPDMAVLR SSVETHGEAM TTVSEFEVAA GETASFVLAY AASHLAVPEP IDAEQALADT EQFWAEWSGR CTYHGGDRDL VMRSLITLKA LTFAPSGGIV AAPTTSLPEK LGGARNWDYR YCWLRDATFT LLALINSGYT EEASAWHNWL LRAVAGAPAD MQIMYGIMGQ RRLLEWQADW LPGYEGAAPV RIGNAAHAQL QLDVYGELID AFHQWRVADI MLDGESWSLE CAVLEHLAKI WNEPDSGIWE LRGPGRHYVS SKVMTWVAFD RGIKSAEMFG LDGPLAQWRA LRDEIHRDIC ANGFDKEQNC FVVSYGAKML DASILLLPSV GFLPASDPRV QGTLKAIERH LMRDGFVLRH DPREVTDEKQ PIEGAFLACS LWLADAYLLA GEIGKAKALF DRVAAVANDV GLLAEEYDSE AKRQTGNFPQ ALTHIALINT AQNLSAVQQP ADKPVTQRAK
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