| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3643 |
|---|
| Symbol | |
|---|
| ID | 3972014 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4051718 |
|---|
| End bp | 4052704 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637926752 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_533497 |
|---|
| Protein GI | 90425127 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.611335 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.301343 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCACATCC TCATTCTCGG CGCCGCCGGC ATGGTCGGGC GCAAACTGAC CGAGCGGCTA
TTGCGCGACG GTCATCTCGG CGACCGCGCC ATCACCAGGT TGACGCTGCA GGACGTGGTG
GCGGCGCCGA AGCCGCTCGA TGCGACGATT CCGGTCACCA TCGTCACCTC GGATTTCGCC
GATCCGCTGG GGGCCGCGCC GCTGGTAGCG TGCTGTCCGG AGGTGATCTT CCATCTCGCG
GCGATCGTGT CCGGCGAGGC CGAGGTCGAA TTCGACAAGG GCTACCGCAT CAATCTCGAC
GGCACCCGCT ATCTGCTTGA GGCAATCCGG GCGATCGGCG ACGGCTACCG GCCGCGGCTG
GTGTTCACCT CGTCGATCGC GGTGTTCGGC GCGCCGTTCC TCGACAAGAT CGGCGACGAG
TTCTTTCACA CCCCGCTGAC CAGCTACGGC ACCCAGAAAT CGATCTGCGA ATTGCTGCTG
GCGGATTACA GCCGCAAGGG CTTTGTCGAC GGCATCGGCA TCCGGCTGCC GACGATCTGC
GTCCGCCCGG GCAAGCCGAA CAAGGCGGCG TCGGGTTTCT TCTCCAATAT CATCCGCGAG
CCGCTGGCGG GCCACGAGGC GGTGCTGCCG GTGTCGGATG ACGTGCGGCA CTGGCACGCC
TCGCCGCGCT CCGCGGTGGG CTTCCTGCTG CACGCCGCGA CCATGGATCT GAAGGCGATG
GGGCCGCGGC GCAATCTGTC GATGCCCGGG CTTTCGGTGA CGGTCGGGGA ACAGATTGCA
GCCCTCGCGC GGGTGGCGGG GCAGGGCGTC GTCGCGCGGA TCAGGCGCGA GCCGGATCCG
GCGATCATCG GCATCGTCGC CGGCTGGCCG CGCGACTTTT CCACCGACCG CGCGCAAAGC
CTCGGCTTCA GCACCGCGGA AAACACCTTC GACGACATCA TCCGGATTCA CATCGAGGAT
GAACTCGAAG GCGAGTTCGT GCGGTAG
|
|---|
| Protein sequence | MHILILGAAG MVGRKLTERL LRDGHLGDRA ITRLTLQDVV AAPKPLDATI PVTIVTSDFA
DPLGAAPLVA CCPEVIFHLA AIVSGEAEVE FDKGYRINLD GTRYLLEAIR AIGDGYRPRL
VFTSSIAVFG APFLDKIGDE FFHTPLTSYG TQKSICELLL ADYSRKGFVD GIGIRLPTIC
VRPGKPNKAA SGFFSNIIRE PLAGHEAVLP VSDDVRHWHA SPRSAVGFLL HAATMDLKAM
GPRRNLSMPG LSVTVGEQIA ALARVAGQGV VARIRREPDP AIIGIVAGWP RDFSTDRAQS
LGFSTAENTF DDIIRIHIED ELEGEFVR
|
|---|
| |