| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3629 |
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| Symbol | |
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| ID | 3970644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4035973 |
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| End bp | 4037307 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926737 |
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| Product | carbohydrate-selective porin OprB |
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| Protein accession | YP_533483 |
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| Protein GI | 90425113 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.419401 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00176786 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGCTACA CGCGACATAG AAATTTCACC ACGCCGCGCG CTTGTGCCAC GGCATTGTTG
GCGACCGGTT TGCTGGCCGG CGGCCTGGTC ACCGCCAGCG CGCAAGAGAA GAGCCTGGAA
GAGCGCGACA AGCTCACCGG CACCTGGGGC GGCGCCCGCA CCGCGCTGGA AGACAAGGGC
ATCGAGATCG GCGTTGTCTA TATCGGCGAA GTGCTCGGCA TCTCGGGCGG CGCCAAGCCC
GCCGGCGGCA CCCATGCCAC CTATGAGGGC CGTCTCGACG TCACCATCAA CACCGACCTG
GAGAAGCTGG TCGGCTGGGC CGGCGCCAAG ACCCATGTCC GCGCCTTCCA GATCCACAGC
GCGCAGGGCC AGAACGCCGC CAACTATGTC GGCTCGATCG CCGATCCCAG CAACATCGAT
GCCTACGGCA CCACCCGGCT GTTCACCGCC TGGTTCCAGC AGGAGTTCGG TACTTGGGGC
TCGATCCGCC TCGGCCAACT CGCCGGCGAC GACGAATTTC TGGTCAGCAC CACCGCGGGC
GGCCTGATCA ACGGCACCTT CGGCTGGGCC GCGATCATGG CGGCGAACCT TCCGAGCGGT
GGCCCGGCGT ATCCGTTGGC CACGCCTGGC GTGCGGCTGC AGGTCAATCC GACCGAGAAC
ATCTCGCTGC TCGGCGCGGT GTTCGCCGGC GATCCGGCGG GCAAGAATTG CACCAGCGGC
AACCAGCAGC GCGATTGCAA CCGTTTCGGC ACCACTTTCA GTCTCGACGG CGGCGCGTTC
TGGCTCGGCG AGGCGCAGTA CAATTTCAAC CAGGACAAGG ATGCCACCGG GTTGGCCGGC
TCCTATAAAG TCGGTGCCTG GTATCACACC GGCGATCGCT TCCTTGATCA ATACTATCAG
AGCAATCGCA GCACCGACTG GGGCATGTAC GGCGTGGTCG ACCAGATGCT GTGGCGCGGC
AAGGACGCCA GCACCAGCAT CTTTGTCCGC GGCGGCTGGA CGCCGTCCGA TCGCAATGTG
GTTTCTTGGT ACATCGACGG CGGCGTCGGC TTCAAAGGCT TCGTCCCGGG GCGCGAGGCC
GACACTCTGA CCATCGGTGT GGCGCATTCC AAAATCAGCA GGGAGGCGGC TGCTTACAGC
TTCGACAACT CCGCTTTGCG GCGTACCGGC GAAACCGTGC TCGAGGTCAG CTACATCGCC
CAGGTCAATC CGTGGTGGAC CGTGCAGCCG GACTTCCAAT ACATCGCCAA GCCGGCGGGC
GGCGCACTCC GCGACGACGG CTCGGTGGTC GACGACGCCT ATGTGTTCGG CGTCCGGACC
ACGATCACGT TCTGA
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| Protein sequence | MSYTRHRNFT TPRACATALL ATGLLAGGLV TASAQEKSLE ERDKLTGTWG GARTALEDKG
IEIGVVYIGE VLGISGGAKP AGGTHATYEG RLDVTINTDL EKLVGWAGAK THVRAFQIHS
AQGQNAANYV GSIADPSNID AYGTTRLFTA WFQQEFGTWG SIRLGQLAGD DEFLVSTTAG
GLINGTFGWA AIMAANLPSG GPAYPLATPG VRLQVNPTEN ISLLGAVFAG DPAGKNCTSG
NQQRDCNRFG TTFSLDGGAF WLGEAQYNFN QDKDATGLAG SYKVGAWYHT GDRFLDQYYQ
SNRSTDWGMY GVVDQMLWRG KDASTSIFVR GGWTPSDRNV VSWYIDGGVG FKGFVPGREA
DTLTIGVAHS KISREAAAYS FDNSALRRTG ETVLEVSYIA QVNPWWTVQP DFQYIAKPAG
GALRDDGSVV DDAYVFGVRT TITF
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