| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3053 |
|---|
| Symbol | |
|---|
| ID | 3973371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3382332 |
|---|
| End bp | 3385853 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637926163 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_532916 |
|---|
| Protein GI | 90424546 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.554309 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAACCA GCCCTGAAGC GATCATAGCC GCCATCACGG ACGCCGCGGC GACGGGCTTT
CGCGGCAGAC TTATCGCGCG GGGCCAAGCG CGTGCCATGA TCTGGCGTGA CGGTGTACTG
CCTCCTGGCG CCCCCGCCTT CTCGTCGCAG CTTAGCTTCG ACCTCCACAG TTACGCCTAT
GGCTTGCTTG GGCTGGGGCT GCGCCTCCTC GAACTGGATG GTGACCCAAA CCAAGCACGG
ATCGCTTTCG AACAAGCGGC GACCGCCCTC GAGGCAGTTA TGGCTAAAGG CAATCGCGCT
GAGGTCGACC GCGACTTCCA TTTCGTCATG GCGGCGGCGA GCTATCATCT CGCGCATCTA
TCCGCTCGAG CTTATTCGCT CCTCGCGATC GTCGCGGCCG AGGAGAATTT CTCCCCCATC
GAACAGGCGC TCGCGCTGTT GATGCGCCGA GACATCACCG AGTTGCGGGC GCGCGTGTAT
GCCTTCCGCC TGGATGGCCG AGGGTCGGAC GCGACTATTG CAGCGCTCTT CCAACAGCGC
CTCGCCGAGC CCGCCGCCGC CGATGCGCCG GAGCGCGATG GACAGGACTT CCTTTTCGAG
GGCCTAGATC TCGCCCTGAC GGATTCCTTC TTCGGCGCCT TCGCGATGTT TCTGCTCGCG
CTGGATCGTG GCGAGCGGGC TCTTGTCGAC CAGGCGATCG CGCAGCTTCG AGAGAGTCTC
GAAATCTGCG CGGAATTGAA CCTTCTGCCA CAATGGTGGG TGCATCGGGT CGCCATCCAT
CTCCTTTCCG ATCTCTGGTC CAACACTTTC CACGAGAAAG TCCCGCTGCT CCCCGCCGGT
GGTGCCGCGC CTTCATGGCC TGGTCTTCGC GAACTCTTCA TCGCCCTGCT CGCTCGGCGT
CCGAGGGCCG AGGTCGACCT CTGGCCGTCG CAGACCGAGG CCGCGTCGCG CGCTGTCGAT
CAGACGGACA ATCTCGTCGT CTCGCTGCCG ACCAGTGCCG GCAAGACCCG AATCGCCGAA
TTGTCCATCC TGCGGTGCCT GGCCGGCGGC AGACGAGTGA TGTTCGTGAC GCCGCTGCGC
GCCCTGTCGG CGCAGACAGA AACCACGCTC CAACGCACCT TCGGTCCACT CGGCAAGACC
ATCTCCGCGC TCTACGGCAG CATCGGCGTG TCCGGCTTCG ATGAGGACGC CATCCGCGAG
CGCGACATCG TCGTCGCAAC CCCTGAGAAA CTTGACTTCG CATTGAGAAA CGATCCGTCG
CTTCTCGACG ACGTTGGCCT GCTCGTGTTC GACGAAGGCC ACATGATCGG ACCTGGGGAG
CGCGAGGTTC GGTACGAAGT CCAGATTCAG CGCCTCCTGC GCCGCCAAGA CGCCGATCAA
CGCCGGATCG TTTGCCTGTC GGCGATCCTT CCTGACGGAG ATCAACTCGA GGATTTCTCG
GCATGGCTGC GTCGCGACCA GCCCGGAGGC CCGATCAAGC ATGACTGGCG ACCGACACGC
CTGCGGTTTG GCGAGGTAAC ATGGAATTCG CCAACAGCGC GTCTCAATCT TCGTGTCGGG
GAGGAAAAGC CCTTCGTGCC TCGCTTCCTC ACCGGCGCGG CTCCACCATT GTTCGTGCCG
CCGAAGAAGC TGCGCACCCG GCTCTTCCCG GATAACCAAC AGGAGCTGAG CCTTGCCACG
GCGTGGCGGC TCGTGAGCGA TGGTCAAACC GTTCTGATCT ACTGCCCAGA GCGTCGGAGT
GTCGAGCCCT TCGCCAAGGT CATCGTGGAG TTGCACTCGC GCGGTGCGCT CGCATCTCTG
CTCACCGTCA ACCCGGCCAC ACTCCAAACT GCTATCGCGC TTGGCGAGGA ATGGCTCGGC
CCAGACAGCG ACATCCTCAA ATGCCTGCGG CTTGGCGTGG CGCTCCACCA TGGTGCGTTG
CCGACCGCCT ATCGCAAGGA AGTCGAGCGG TTGCTGCGCG ACGGTGTGCT CAAAGTCACG
ATCTCATCGC CAACCCTCGC TCAGGGGCTC AACCTGTCAG CGACGGCCGT CGTCATGCAC
TCGCTCTATC GGCATGGGGA GAAGATCAAG GTCTCCGAGT TCAAAAACGT CATCGGCCGC
GCTGGTCGCG CCTACGTCGA TGTCGAAGGC CTCGTCCTCT ATCCCATCTT TGAGGACGCA
AAGAATAGGA AGCTCAACGA GTGGATCGAG CTGATCGAAG ATCTCGGCGC CCGCGAGATG
GAGAGCGGGC TCATCCAGCT CATCTTCTCG CTGCTCAAAC GCATGCACGC CCGGCTTGGG
GGCAACCTTG ACCAATTGAT CGACTATGTC GTTAACAACG CGGCAGCATG GACCTTTCCC
GAGGTCGCAG GGGAAAAGCC CGATAAGCGC GAGCGGGCAC TTAACGAGTG GGAGCGCCAT
ATGGCGACGC TCGATACGGC CATTCTCAGC CTCATCGGCG AAGCCGACGT GCCGGATGAC
CAGATCGAGA CCGCGCTCGA CAACATCCTT CAATCCTCGC TCTGGCAGCG TCGATTGCTC
CGCGTGGACG ACGCATCGCG CGCCGCCTAT CGCGCCGCGC TGCTCACCCG AAGTCGCTAC
ATCTGGGCGA ATTCCACGGC TGCAACGCGA CGCGGCTACT TCCTCGCGGG CCTTGGCCTC
GAAGCCGGTC ACGCTCTCGA CGCCGTTGCA GCCGAGGCAA ACGATCTCCT CGTCCAAGCA
AACGCTGCCC TCATGGTGTC GGATCATGAG GCGGCGATCG CCGCGATCAC CGGGATCGCC
GAGCGCGTGT TCGCCTTCTA CCCATTCGAG CCCGACCCAT TCCCAGTCAA CTGGCGGGAC
ATCCTGCGAT GCTGGCTGCT TGGGCAGCCG CTCGCCGCGA CGGTCGCCGG TCAAGAAGGT
GAAGCGTTGC AATTCATCGA GGGTGGGCTG GTCTATCGCC TGCCTTGGGC CATGGAGGCG
TTGCGCGTTC GGGCTGCCGC CAATGGCGAT GTCGTCGGTG TGTTCGGCCT AGCGCTGGGG
GATTACGAGT TGGGCCTGGC GGTACCGGCC GTGGAAACCG GAACGATCAA TCGCTCCGCG
TCAATCCTGA TCCAGGCAGG CTTCAACTCG CGGCTCGCTG CCATCAAAAT CATTACCGAC
ACCGGCGCCA CGTTTACGAG CGGTGCGGAA CTGCGAGCTT GGCTTCGCAC ACCCGGCGTC
GCAATCTGGT CGGCCGAACC AGATTGGCCG ACCGCAGAAA CGAGGGCCAT GTGGCTCGAA
TTTATCCGGG AGTTCGCGCC GGCCGACAAC CGGACTTGGG CGCGGCGAGA CTATCTTGGA
AACGTCCAGT GGTTCGCCGC ACCCGCCCCT CCCGGGACGC CCGTTAACCT CTGTCACCGG
AATGGACAGC CGCTGGTGCT GGCACCCGAC GGGCGCGCGA TCGGCCTGCT GCAACACCCG
CTCAACTCAA ATCGGCGTGG TCTCGTGCGA GCGAACGTCT CTCAGAACGT TGCCCATCTC
GATCTGAGCT ATCTCGGCCC CGATGACTTG TGGGGAGCCT AG
|
|---|
| Protein sequence | MPTSPEAIIA AITDAAATGF RGRLIARGQA RAMIWRDGVL PPGAPAFSSQ LSFDLHSYAY
GLLGLGLRLL ELDGDPNQAR IAFEQAATAL EAVMAKGNRA EVDRDFHFVM AAASYHLAHL
SARAYSLLAI VAAEENFSPI EQALALLMRR DITELRARVY AFRLDGRGSD ATIAALFQQR
LAEPAAADAP ERDGQDFLFE GLDLALTDSF FGAFAMFLLA LDRGERALVD QAIAQLRESL
EICAELNLLP QWWVHRVAIH LLSDLWSNTF HEKVPLLPAG GAAPSWPGLR ELFIALLARR
PRAEVDLWPS QTEAASRAVD QTDNLVVSLP TSAGKTRIAE LSILRCLAGG RRVMFVTPLR
ALSAQTETTL QRTFGPLGKT ISALYGSIGV SGFDEDAIRE RDIVVATPEK LDFALRNDPS
LLDDVGLLVF DEGHMIGPGE REVRYEVQIQ RLLRRQDADQ RRIVCLSAIL PDGDQLEDFS
AWLRRDQPGG PIKHDWRPTR LRFGEVTWNS PTARLNLRVG EEKPFVPRFL TGAAPPLFVP
PKKLRTRLFP DNQQELSLAT AWRLVSDGQT VLIYCPERRS VEPFAKVIVE LHSRGALASL
LTVNPATLQT AIALGEEWLG PDSDILKCLR LGVALHHGAL PTAYRKEVER LLRDGVLKVT
ISSPTLAQGL NLSATAVVMH SLYRHGEKIK VSEFKNVIGR AGRAYVDVEG LVLYPIFEDA
KNRKLNEWIE LIEDLGAREM ESGLIQLIFS LLKRMHARLG GNLDQLIDYV VNNAAAWTFP
EVAGEKPDKR ERALNEWERH MATLDTAILS LIGEADVPDD QIETALDNIL QSSLWQRRLL
RVDDASRAAY RAALLTRSRY IWANSTAATR RGYFLAGLGL EAGHALDAVA AEANDLLVQA
NAALMVSDHE AAIAAITGIA ERVFAFYPFE PDPFPVNWRD ILRCWLLGQP LAATVAGQEG
EALQFIEGGL VYRLPWAMEA LRVRAAANGD VVGVFGLALG DYELGLAVPA VETGTINRSA
SILIQAGFNS RLAAIKIITD TGATFTSGAE LRAWLRTPGV AIWSAEPDWP TAETRAMWLE
FIREFAPADN RTWARRDYLG NVQWFAAPAP PGTPVNLCHR NGQPLVLAPD GRAIGLLQHP
LNSNRRGLVR ANVSQNVAHL DLSYLGPDDL WGA
|
|---|
| |