Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_2993 |
Symbol | |
ID | 3973235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 3274909 |
End bp | 3276681 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637926104 |
Product | hemolysin activation/secretion protein |
Protein accession | YP_532857 |
Protein GI | 90424487 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00815358 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGCGTTTG GGATCCGTTC CGGCACGACT GCCGGGCGGG GGTGGCAGAT TGCCGCCTGC TGTCTGGCGT TGGCGACCTG CGATGGGCGG TCCACGTTGG CCGCGGCAGC GCCTGCGGAA TCGATGACAG GCGAGCCGAA TAGAAGCAGC CAAGCCACTG ACAGTTCCGC GATTGCGTCG CGACCGGGAC GGCCGGCCGG GACCGGTTCG CCCGGTACGA GTTCGAAGGC GGCTGCCTCG GGCACGACGA GCCGCTTCGA TATTGACGAG TACCGGGTCG AGGGGGCCGA AAACCTTCCG CAGATCGAGG TCGAGAGTGC GGTTTATCCG TATCTCGGCC CGGGTCGTAC CTCGGACGAC GTCGAAAAGG CCCGCGCCGC CTTGGAGAAG GCTTACCATG ACAAGGGCCT GCAAACCGTG GGCGTCTCTG TTCCGCAGCA GGATGCGCAA CGCGGCTTCG TCGTTCTCAA AGTGGTCGAG AACAAGGTGG GCCGGCTGAG GGTCAAAGGC TCGCGCTATT TCGATCTCGC CGAAATCAAG CGCCGGGCGC CTTCCGTCAA GGAGGGGGCG TTGCCGAATC TCCAGGCGGT GACCAACGAC ATTGTCGCGC TCAACCGGTG GCCGGACCGG CGGGTCACGC CGGCGCTGCG CGCCGGGGTG ACGCCTGGCA CCGTCGACGT CGATCTCAAT GTCGAGGACA CTTATCCGCT GCACGGCAGC GTCGAACTCA ACAATCGGCA GAGTCCGAGT ACGACGCCGC TCCGCCTGAG CGCGTCGCTG CGGTACGACA ATCTGTGGCA ACTCGGCCAC TCGATGACGG TGAGCTATCA GGTGGCACCG CAGAATCCGA AGGATGCGAC GGTTGTCTCC GCCTCCTACC TGGCGCGAAC CGACTATGAC TGGCTGAATA TACTGGTCTA TGGGCTGAAA TCGGACAGTT CGGTCGCGAC CGTCGGCGGA TCGAACGTCG TCGGCCCCGG CCAGGTGATC GGCTTCCGCG ATGTGATCAC GTTGCCGACA CGGGGCGAGC TGTTTCACAC GCTGTCGCTG GGAGCCGACT ACAAGGATTT CCAGCAGACC CTATCGCTCG CTGATGGCTC GTTCGATTCG CCGGTGAAAT ACGTTCCGCT GGTTGCCGCC TACAGCGCGA CTTGGCAAGG GGATGGACGG CTGACGCAGC TCAACGCGGC CGTTACCACG GGACTGCGCG GCGCCGGCAG CAGCCCGGAA CAGTTCGACG TCAAGCGTTA CAAGGCGACT GGTAGCTTCG CTCATCTGCG CGGAGATCTG TCCCACACCC AAGAGTTGCC CGGCGGCCTG CAATTGTTCG GCAAGCTGCA GGGCCAGCTT GCCGATCAGC CGCTGGTTTC CAGCGAACAG TTCAGTCTCG GAGGCCAGGA TACCGTGCGC GGGTATCTCG AATCCGAGGT GCTGGGCGAT TACGGCGTCG CCGGAACGCT CGAACTGCGC TCCCCGAATC TCGCTCCGTA CTGGGAACAG ACGTTGGAAA ATCCAACTGG CGCGCCAGTG AAATTCAATG TGTTCGACGA GTGGCGGTTC TTCGCATTTG CCGATGCCGG CCATGCCAAG ATCCACAATC CGCTCGAGGA ACAGCAGCAG CGGTTCGATC TGGCGAGCTA CGGCGTCGGC ACCCGGGTGA AGACCCTGAG GTACCTTAAT GGCATCGTGT TTGTCGGCAT ACCAGTGACC AGTCAACAGG TCACGGTCGC TCGTAGCCCG CTCGTGAGCT TTCGAATTTG GGGAGAATTC TGA
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Protein sequence | MAFGIRSGTT AGRGWQIAAC CLALATCDGR STLAAAAPAE SMTGEPNRSS QATDSSAIAS RPGRPAGTGS PGTSSKAAAS GTTSRFDIDE YRVEGAENLP QIEVESAVYP YLGPGRTSDD VEKARAALEK AYHDKGLQTV GVSVPQQDAQ RGFVVLKVVE NKVGRLRVKG SRYFDLAEIK RRAPSVKEGA LPNLQAVTND IVALNRWPDR RVTPALRAGV TPGTVDVDLN VEDTYPLHGS VELNNRQSPS TTPLRLSASL RYDNLWQLGH SMTVSYQVAP QNPKDATVVS ASYLARTDYD WLNILVYGLK SDSSVATVGG SNVVGPGQVI GFRDVITLPT RGELFHTLSL GADYKDFQQT LSLADGSFDS PVKYVPLVAA YSATWQGDGR LTQLNAAVTT GLRGAGSSPE QFDVKRYKAT GSFAHLRGDL SHTQELPGGL QLFGKLQGQL ADQPLVSSEQ FSLGGQDTVR GYLESEVLGD YGVAGTLELR SPNLAPYWEQ TLENPTGAPV KFNVFDEWRF FAFADAGHAK IHNPLEEQQQ RFDLASYGVG TRVKTLRYLN GIVFVGIPVT SQQVTVARSP LVSFRIWGEF
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