| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2281 |
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| Symbol | |
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| ID | 3971608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 2480721 |
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| End bp | 2481494 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637925389 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_532154 |
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| Protein GI | 90423784 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.240167 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.806426 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGCCCGGCC GTGACGGATC ACAACGCGCC ATGACCCTGC CCCTCGCCTC CCGTATCGCT
CTCGTCACCG GCGCCTCGCG CGGCCTCGGC TACGCCACCG CCCGCGCCCT GGCCAAGGCC
GGCGCCCATG TCGTCGCGGT GGCGCGCACC CAGGGCGGGC TGGAAGAGCT CGACGACGAG
ATTCGCAAAG CCAGCGGCGA AGGCGCCACG CTGGTGCCGC TCGACCTCAC CGATCTCGAA
GCCATCGCAA GGCTCGGCGG CGCGCTGCAC GAGCGCCACG GCAAGCTCGA TATTTTCGTG
GGCAACGCCG GCATCGCCGG GCCGTCGTCG CCGCTCGGCC ATATCGCGCC GAAGCCGTGG
GGCGACGTGA TGGCGATCAA CCTCAACGCC AATTTCCAGC TGATCCGCTG CATGGAGCCG
CTGCTGCGGG TTTCCGACGC CGGCCGCGCG GTGATGATCA GCTGCGACGA GGCGCGCCGC
GCGCCGGCCT ATCGCGGCCC CGCCGCGGCC TCGAAAGCCG CGCTGGAAAC CTTGACCCGG
GTGTGGGCGG CGGAAAACGC CACCACGGCG CTGCGCGTCA ACCTGTTCGA TCCCGGCCCG
GTGCGCACCC GGCTGCGCGC CACCATCATG CCGGGCGAAG ATCCGGAGAC CCTGCCCACC
GCGGCCGAGG TCGCCGAAGC GCTGCTGCCG CTGTGCCTGC CGTCGTGCGA CGACAACGGC
AAGCTCTACG ACTACGCGAG CCGCACGCTG CGGGACTTTG CCGCTGCGGT GTAG
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| Protein sequence | MPGRDGSQRA MTLPLASRIA LVTGASRGLG YATARALAKA GAHVVAVART QGGLEELDDE
IRKASGEGAT LVPLDLTDLE AIARLGGALH ERHGKLDIFV GNAGIAGPSS PLGHIAPKPW
GDVMAINLNA NFQLIRCMEP LLRVSDAGRA VMISCDEARR APAYRGPAAA SKAALETLTR
VWAAENATTA LRVNLFDPGP VRTRLRATIM PGEDPETLPT AAEVAEALLP LCLPSCDDNG
KLYDYASRTL RDFAAAV
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