Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1119 |
Symbol | fliR |
ID | 3969553 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1220975 |
End bp | 1221721 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637924230 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_531002 |
Protein GI | 90422632 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.294704 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.892593 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCGCAC CGGCGTCGAT CTCGGTGTTG GTGGTGTTCC TGATCTTCTG CCGGGTCGGC ACCTGCATGA TGGTGGCGCC GGGCTATTCC AGGTCGAACA TTCCGGTGCA GGTCAGGCTG TTCTTGGCGC TCAGCGTCAC GCTGATGTTG TCGCCTTTGC TCGAAGCCAC GGTCCGGCCG GCGCTGGAGG GCGCGGCCGC GCCGGCGATC CTCGGCCTGA TCTGGTCGGA ACTGGTGGTC GGACTGATGA TCGGCTTGAC CGCGCGGGTG TTCTTCGCCG CGCTGGAGAC CTTGGCCACC TTCGTCGCAT CGGCGATCGG GCTCAATCTG GCCGGCACGG TGGACGACGG CGAACACGTG CCGGCGTTGG TGCCGTTGAT CACCGTGTCG GCGACGGTGC TGTTCTTCAT GACCGAGCAG CATTGGCAGC TGCTGCGCGG CCTGCTCGGG TCGTACCGGA TCTGGTTGCC GGCGACCGGC GTCGGCATCG GGGACGGCGT TGCCCAGCTG GTCGATCACC TGTCGCAGGC CTTCACGTTG GCGCTGCGGG TGGCAAGCCC GTTCGTGATC TATTCGGTGA TCGTCAATCT GGCGATCGGG CTCGCCAACA AGCTGACGCC GAGCATTCCG GTGTACTTCA TATCGCTGCC CTTCGTGTTG TTCGGCGGGT TGCTGCTGCT GTATCTCACC GGCCGCGAAA TGGTGCTGCA GTTCTCCATC GCCTTCGCGG CGTGGCTCGC GGGGTGA
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Protein sequence | MIAPASISVL VVFLIFCRVG TCMMVAPGYS RSNIPVQVRL FLALSVTLML SPLLEATVRP ALEGAAAPAI LGLIWSELVV GLMIGLTARV FFAALETLAT FVASAIGLNL AGTVDDGEHV PALVPLITVS ATVLFFMTEQ HWQLLRGLLG SYRIWLPATG VGIGDGVAQL VDHLSQAFTL ALRVASPFVI YSVIVNLAIG LANKLTPSIP VYFISLPFVL FGGLLLLYLT GREMVLQFSI AFAAWLAG
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