| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4295 |
|---|
| Symbol | |
|---|
| ID | 3912108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4881600 |
|---|
| End bp | 4882706 |
|---|
| Gene Length | 1107 bp |
|---|
| Protein Length | 368 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637886199 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_487893 |
|---|
| Protein GI | 86751397 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.369293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCGTC ATTCGCCCAT CGCCATCGCC TGTCTTGCTG CGCTGCTCGC CGCCGGCGTC
GCGCGCGCCG GCGATGAGCT GCCGATCTCG CCGGTGCAGG CCGAGCGCGT CGGCATCGAG
ACCTCGCCGC TGGAGCAGCA GCCGGTCGCC GTGGGCCTCA GCTTTCCCGG CAAGATCACC
GTGCCGCCGG ATCGCACCCG GCTGATGAAC GCGCCGTTCG GCGGCCGGAT CGAGCGCCTG
CTGGTGCGCA CCGACAGCGC CGTCAAGGCC GGCGACGTGC TGGCCGAGCT GCAGAGCCCG
GCGCTGGCGC ACGCCCAGGC CGAATATCTC GTCGCCTACA ACAAAGAGGG TCTGCTGAAG
ACCAATCTCG ACCGCGAGGA GCAGCTCGCG CCCTATGGCG CGGTGCCGAA GAAGCAGGTC
ATCATCACCC GGAACGAATA CGACCAGGCC CGCGCCACCG CGGCCGAGCG CCGCCAGGCG
CTGTCGCATG TCGGCATGAC CGAGCCGCAG ATCGAGAAGC TGACGTCGAG CCAGAAGCTC
GATCCGAAGC TGACGCTGAT TGCGCCGATC GACGGCGTGG TGCTGGAGAG CGCGACGATG
CCGGGCCAGA CCGTCGAGGC GCTGGCGCCG GTGTTCAGGC TGGCGCAACT GTCGCCGCTG
TGGGTCGAGA TCCAGGTGCC GGCGTTGCGT GCCGAGCAGT TCGCCGTCGG CGCCCGCGTC
ACCGTGCGCG GCCACGATTG CGTCGGCCGC GTGGTGTCGA TCGGCTCGAG CGTCGAGCCG
ACCTCGCAAA CCGTGATCGT CCGCGCCGAA TTCGACGAGC CCGATCCGGA TCTGCGCCCG
GGCCAGATGA TCGAGGCGCA GATCACGTCG GCGACCACCG GCGAAAGCGA ATGGCGGGTG
CGCACCGGCG CGATGGTGCG GCGCGGCGGC GACGCCTTCG TATTCGTGCA GACCTCGGGC
GGCTTCGTCG CCACCCCGGT GAAGATCCGC GAGGAACTGC CGCAATTCGC CGTGGTCAGC
GGCAGCTTCC GCGGCGACGA ACGCATCGCG GTGCGTGGCT TGGCTGCGCT CAAGGGCGCG
TGGCAGGGTC TCGGCGGGGT CGAGTAA
|
|---|
| Protein sequence | MRRHSPIAIA CLAALLAAGV ARAGDELPIS PVQAERVGIE TSPLEQQPVA VGLSFPGKIT
VPPDRTRLMN APFGGRIERL LVRTDSAVKA GDVLAELQSP ALAHAQAEYL VAYNKEGLLK
TNLDREEQLA PYGAVPKKQV IITRNEYDQA RATAAERRQA LSHVGMTEPQ IEKLTSSQKL
DPKLTLIAPI DGVVLESATM PGQTVEALAP VFRLAQLSPL WVEIQVPALR AEQFAVGARV
TVRGHDCVGR VVSIGSSVEP TSQTVIVRAE FDEPDPDLRP GQMIEAQITS ATTGESEWRV
RTGAMVRRGG DAFVFVQTSG GFVATPVKIR EELPQFAVVS GSFRGDERIA VRGLAALKGA
WQGLGGVE
|
|---|
| |