Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4194 |
Symbol | |
ID | 3912002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4766136 |
End bp | 4767824 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637886098 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_487797 |
Protein GI | 86751301 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.674763 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCGAT CGCTGCTTCT TGTTTGGGCA ATATTGGGAA CGAGCGTCGC GTTTGCGCAG ATCCCGGCAC CGAACGGGAA CGGCAACGGC AGTCCTCCCG CCAAGGCGGA GGAGAAGCCC GCCGATCCGC TCGGCCGCGA TACGCCGGCC GGTATGGTCA CCGGCTTTAT CGATGCCGCC GCCGAGCAGA ATTATGACAA GGCCGCGCAA TATCTCGATC TCAGCCAGGA GAAGGGCGCC TGGGGGCCGA GCGTCGCGCA GCAGCTGCAG CGCATTCTCG ACCAGGGCGG CTACGTGTTT TCGCGGTTGC GGCTGAGTGC GGATGCCGCC GGTGACCAGG ACGACGGACT TGCGCCGGAT CAGGACAAGT TCGGTGCCGT GCGCACCGAT CACGGCAGCG TCGATCTGAT CGCGCAGCGG GTCGACGGCA AGGACGGCGT CAAGATTTGG CTGGTGTCGG CGCGGACGGT CGGTGAGCTG CCGGCGCTGT CGCGCACGGT GACGTCGAGC CTGGTCGACA GGATCCTGCC CTATGCGCTC CGCGACGAAT ACCGGCTCGC CGGCGTTCCG GCGGGCCACT GGCTGGCCGT CATCGTGCTC GCGGTGCTGA CATTTTCGAT CGTGTGGGCG ATCACCGCCG CGATCCTCTG GGTGGTCTTC CGCTTTCGCG GCCCGGAGTC CCGCATCAGT CGCGTGCTGA GCGCCTCGGC GCTGCCGATC CGGCTGTTCT TCACCGCGAT GTTGCTGCGC ATCGCGCTGG TGCTGACCGG CGTGGCGATC GTCGCGCGCC AGCACATGTC CGGCGCCACC GAACTGCTCG GCTGGATCGC GCTGTCCTGG ATCGTCTGGC GGGTGGTCGA CGCGCTGGCC GAATTCGCCA TCGCCCGGAT GACGCTGCGC GGCCGGCTGT CGATGCTGTC GGCGGTGACC TTCATCCGGC GCAGCGTCAA GTTCGCGCTG ATCGCTTTCG CGGCGATCGC CGGGCTCAAC GCGCTGGGCT ACAATGTCAC CGCGGGTCTC GCCGCTCTGG GCATCGGCGG TATCGCGATC GCGCTCGGCG CGCAGAAGAC CATCGAACAT CTGGTCGGCA GCCTGACTCT GGTGACCGAT CAGCCGATGC GGGTGGGCGA TTTCTGCAAA TTCGGCGAGA CGATGGGCAC GATCGAGGAC ATCGGCATGC GCTCGACCCG GATTCGGACC CTCGACCGCA CCCTGGTCAC CGTGCCGAAC GGCGCGCTGG CCGCGGTGCA GATCGAGAAC TTCAGCCGCC GGGACAAGTT CTGGTACCAC CCGATTCTGG ACCTGCGCTA CGAGACCACG CCGGACCAGA TGCGCGGCCT GATCGCGGCG ATCCGCGAGA TGCTGCTGGA GCATCCGAAG GTCGACAACG ACCCGGCGCG GGTGCGGCTG CTCGGCTTCG GGTCGAATTC GCTGCGGGTC GAAATCTTCG CCTACATCCA CGCCGTGAGC ATGGATGAGT TCCTGGAAGT GCAGGAAGAT CTGACTCTGA GGCTGATGGA ATTGGTCGAG GCGGCGGGGA CCGGCTTCGC CTTCGCGTCG CAGACCGTCT ATTTCGCGCG GGACAAAGCT CCGTCGTCGG GCCGCTCGCC GGCTCTCGCG CCGGCGGACC ACCCGGACGG CGATAGCGCC GCGTCGCAGC ATCGCGCGGG CGCCGCTGCT CGCACCTGA
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Protein sequence | MFRSLLLVWA ILGTSVAFAQ IPAPNGNGNG SPPAKAEEKP ADPLGRDTPA GMVTGFIDAA AEQNYDKAAQ YLDLSQEKGA WGPSVAQQLQ RILDQGGYVF SRLRLSADAA GDQDDGLAPD QDKFGAVRTD HGSVDLIAQR VDGKDGVKIW LVSARTVGEL PALSRTVTSS LVDRILPYAL RDEYRLAGVP AGHWLAVIVL AVLTFSIVWA ITAAILWVVF RFRGPESRIS RVLSASALPI RLFFTAMLLR IALVLTGVAI VARQHMSGAT ELLGWIALSW IVWRVVDALA EFAIARMTLR GRLSMLSAVT FIRRSVKFAL IAFAAIAGLN ALGYNVTAGL AALGIGGIAI ALGAQKTIEH LVGSLTLVTD QPMRVGDFCK FGETMGTIED IGMRSTRIRT LDRTLVTVPN GALAAVQIEN FSRRDKFWYH PILDLRYETT PDQMRGLIAA IREMLLEHPK VDNDPARVRL LGFGSNSLRV EIFAYIHAVS MDEFLEVQED LTLRLMELVE AAGTGFAFAS QTVYFARDKA PSSGRSPALA PADHPDGDSA ASQHRAGAAA RT
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