| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4027 |
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| Symbol | |
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| ID | 3911834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4596683 |
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| End bp | 4597882 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637885931 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487631 |
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| Protein GI | 86751135 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.278871 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.718772 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGGGAT CCATCAGGTT TGCCTTGACG GCGGTGACGC TTGCGTGTCT CGCGCCGGGG
TTGGCCGGCT GTAACGACCC GAAGACAGCG AATGCGGCGA CGCCCGAGAA GCCGGAAGTC
GGCATCATCA CGGTGAAGCC TCACGCCCGT GCGATCGTTC GCGAACTGCC CGGCCGCATC
GCGCCGATCC GCGTCGCCGA CGTGCGGCCC AGGGTCTCCG GCATCGTGGT CCACCGCCCG
TTCAAGCAGG GCAGCGAGGT CAAGGCGGGC GATCCGCTCT ACGTCATCGA CCCGCGGCCG
TTCGAGGTCG AATTGAAGGC CGCCGAGGCC GCGCTCGCCA AGGCGCATGC GGCGCGCGAG
CAAGCGTTGC AGCAGGCCAA TCGTGTGGCG ATGCTGACCA GGGAGCAGGC CGCCTCCAAG
GCGCAGAACG AAGTCGCGGC CAGTAATTCG CGGCAGGCCG ATGCGGAGGT CTCCGCCCGG
GAGGCCGAAG TCTCGCGCGC CAAGCTGAAC CTCGAATATG CCACCGTCCG GGCGCCGATC
AGCGGCAGGA TCGGCGCTGC GCTGGTGAGC GAGGGCGCTC TGGTGGTCCA GAACGACTCC
AACAGCCTCG CCACGATTCA GCAGCTCGAT CACGTCTATG CCGACTTCAC CCAACCGGTC
GCCGAAATGG TCCGGCTGCG TCGCGCTTTC GAATCCGGCG AACTCGACCA GATCGCGCCG
GACGCGGCGC GCGCCCGGCT GGTGCTGGAC GACGGCACGG TCTACCCGTT GCCCGGCAAG
CTGCTGTTCT CGGAGTCGAA GGTCGACGCC TATACCGGCC AGGTGACGCT GCGCGCCGAA
TTCGACAATC CGAACCGCGA ATTGCTGCCC GGCATGTATG TCCGCGTGCG GATCGAGCAG
GGCTTCGACG CCGACGCGAT CTCGGTGCCG GAGGAGGCGG TCCAGCGCAA CGGAGGCGGC
GGCAGCGAGG TCTTCGTGGT CAAGGACGAC AATCGCGTGG CGGTGCAGCC GGTCCGCGTC
GGCTCGCAGC AGGACGGCCA GTGGCTGGTG CTCGACGGCC TCAAGCCGGG CGCGCGCGTC
GTGGTCGAGG GCTTCCAGAA ATTCGCGGCT GGAGACGCCG TCGTTCCGGT GAGCCTCGAG
GAAACCAAGT CCGCGACCGC AGCCCCTCCG ACGACGGGCA GCACGCAGAA GCTGCAGTAA
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| Protein sequence | MRGSIRFALT AVTLACLAPG LAGCNDPKTA NAATPEKPEV GIITVKPHAR AIVRELPGRI
APIRVADVRP RVSGIVVHRP FKQGSEVKAG DPLYVIDPRP FEVELKAAEA ALAKAHAARE
QALQQANRVA MLTREQAASK AQNEVAASNS RQADAEVSAR EAEVSRAKLN LEYATVRAPI
SGRIGAALVS EGALVVQNDS NSLATIQQLD HVYADFTQPV AEMVRLRRAF ESGELDQIAP
DAARARLVLD DGTVYPLPGK LLFSESKVDA YTGQVTLRAE FDNPNRELLP GMYVRVRIEQ
GFDADAISVP EEAVQRNGGG GSEVFVVKDD NRVAVQPVRV GSQQDGQWLV LDGLKPGARV
VVEGFQKFAA GDAVVPVSLE ETKSATAAPP TTGSTQKLQ
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