Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4005 |
Symbol | |
ID | 3911812 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 4571884 |
End bp | 4573434 |
Gene Length | 1551 bp |
Protein Length | 516 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637885909 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_487609 |
Protein GI | 86751113 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.665607 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00234507 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAGGGATC AGACCGCAAA GAATCGCGTG GTGGTGATCG GTGCCGGCGT GGCCGGACTG ACCTCCGCTC TCGCCCTGTC GGCGCGCGGC CTCGACGTGA CCGTGGTCGA GCGCGCCGCG ACGCCGGGCG GCAAGATCCG CGAGGTCGGC ATCGGCGCGG CGCGGATCGA CAGCGGCCCC ACCGTCTTCA CCATGCGCTG GGTGTTCGAG GAATTGTTCG CCGCGGCCAA GCTGAACTTC GCCGATCACG TCCGGCTGCG GCCGCTGTCG GTGCTGGCGC GCCATGCCTG GAACGAGGCC ACGCGACTCG ATCTGTTCGC CGACGAGGCG CGCTCGGCGG ATGCGATCGG CGTGTTCGCC GGCCCGGCCG AGGCGAAGCG CTACCGACAA TTCTGCGCCG ACAGCCGGCG GATCTATCAG ATCCTAGAAC AACCGTTCCT GCGCGCCACC GCGCCGAGCC TGCCCAGCCT CGCCACCGCC AACGGCCTCG GCGGGCTGCT GGAGTTGCGC AAGATCCGCC CGTTCACCAC GATGTGGAAC GCGCTCGGCG ACTACTTCCG CGATCCACGC CTGCGGCAAT TGTTCGGGCG CTATTCGACT TATTGCGGAT CCTCGCCGTT CCAGGCGCCG GCGACGCTGA TGCTGGTCGC GCATGTCGAG CAGCAGGGCG TCTGGATCAT CGAGGGCGGC ATGCATGCGC TGGCGCGCGC GCTGGCCGAT TGCGCGGCGT CGCAAGGCGC CAGCATTCGC TACGATCAGG AGGTGCGCGA GATCATGGTC TCGGGCGGCC GCGCCGCCGG GGTGATTCTC GCCAGCGGCG AACGCATCGA AGCGCAATCG GTGATCGTCA ACGCCGATGT CGGCGCCCTG CCCGGCGGCC TGTTCGGCGA CCAGGTGCAA CGCGCCGTGC CGCCGCTGGC GCCGAAGCTG CGGTCGCTGT CGGCGATGAC CTGGAGTATG GTGGCGAAGA CCGAGGGTTT TCCGCTCAGC CGGCATTCGG TGTTCTTCTC CCGCGACTAC GCGCGCGAAT TCAACGATAT CTTCCAGCGC GGCGAAGTGC CGAGCGAGCC GACCGTCTAT GTCTGCGGTC AGGACCGAAT CGACGACGAC GCGCGGCTCG GCGATGGCGG CGAGGAAGAA CTGCTGGTGC TGATCAACGC GCCGCCTGTC GGCGATCGCA AACCGTTCGA TGAGGCCGAG ATCGCGCGTT GCGCGGAGCG CACGTTCGAC GTGCTGGAAC GCTGCGGGTT GCGCATCCGG CTTCAGCCTG ACAAAACCAC GGTGACCACG CCCGCCGATT TCAACCGGCT GTTTCCGGCG ACCGGCGGGG CGCTGTACGG CCGCGCCTCG CACGGCTGGA CCGCCTCGTT CGAGCGCCCC GGCGCACGGA CGAAAATCCC CGGCCTGTAT CTCGCCGGCG GCAGCACCCA TCCCGGCCCC GGCGTGCCGA TGGCCGGCCT GTCCGGGCGC GCCGCCGCGG CGAGCCTCGT GGCCGACCTC GAGGCCGAGC TGCAGGGCTT GAAGCCGATG CTGCGGCCGG CCGCCACCTG A
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Protein sequence | MRDQTAKNRV VVIGAGVAGL TSALALSARG LDVTVVERAA TPGGKIREVG IGAARIDSGP TVFTMRWVFE ELFAAAKLNF ADHVRLRPLS VLARHAWNEA TRLDLFADEA RSADAIGVFA GPAEAKRYRQ FCADSRRIYQ ILEQPFLRAT APSLPSLATA NGLGGLLELR KIRPFTTMWN ALGDYFRDPR LRQLFGRYST YCGSSPFQAP ATLMLVAHVE QQGVWIIEGG MHALARALAD CAASQGASIR YDQEVREIMV SGGRAAGVIL ASGERIEAQS VIVNADVGAL PGGLFGDQVQ RAVPPLAPKL RSLSAMTWSM VAKTEGFPLS RHSVFFSRDY AREFNDIFQR GEVPSEPTVY VCGQDRIDDD ARLGDGGEEE LLVLINAPPV GDRKPFDEAE IARCAERTFD VLERCGLRIR LQPDKTTVTT PADFNRLFPA TGGALYGRAS HGWTASFERP GARTKIPGLY LAGGSTHPGP GVPMAGLSGR AAAASLVADL EAELQGLKPM LRPAAT
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