| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3892 |
|---|
| Symbol | |
|---|
| ID | 3911696 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4447347 |
|---|
| End bp | 4448492 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885793 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_487496 |
|---|
| Protein GI | 86751000 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC TCAAGGCGCT CCTGGCCGCG GCCGTGCTCG CGTCGACCGC CGGCGCCGCA
TCGGCGCAGG TCAAGGTCGG CGTGATCGCG TCGTCGACCG GTCCGATCTC GGTGGTCGGG
CTGCAGCAGA AGAACACCGT GGCGCTGTTG CCGAAGACCA TCGGCAATCT CACGGTCGAC
TACATCTACA TGGACGACAA CAGCGATCCC ACCCAGGCGA CCAAGAACGT CCAGAAATTC
CTGATCGAGG ACAAGGTCGA CGCCATCATC GGCCCGTCCG GATCGCCGAA CGCGATGGCC
GTGCTGTCCT TCATCGCCGA CGCCAAGACG GTGATGCTGG CGCCGGTCGG CACCACCGCG
GTGGTGCTGC CGATGGACGA GAAAAAGAAG TGGGTGTTCA AGACCACCCA GAACGACAAT
CTCGTGATGG ACGCGCTGGT CGCGCACATG AAGACCAACG GCGTCAAGAC GGTCGCCTTC
ATCGGCACCA ACGATCCGCT CGGCGCCAAT TTCGCCAAGG CCTTCAAGGC CGTGATCGAC
AAGGAAGGCA TCAAGCTGGT CGCCGAAGAA ACCTTCAGCC GCGCCGATAC GTCGGTGGCC
GGCCAGAGCC TGAAGATTCT GTCGGCCGCG CCGGACGCGG TGCTGGTCGG CGCGGCGGGC
GCCACCACCG TGCTGCCCGA AGTGACGCTG GTCGATCAGG GCTACAAGGG CAAGATCTAC
CAGACCCACG GCGCCGCGAC GCCGGAATTC ATCAAGCTGG GCGGCAAGAA GGTCGAGGGC
ACCATTCTCG CCGCGAGCCC GATGCTGGTG CAGGCGCAGA TCGGCGACGA TGTGCCGTCG
AAGGCCTCGG GACAAGCCTA TATCGACGCC TACACCAAGG TGTACGGCGT AGCGCCCGGC
ACCTTCGGCG CCAATGTCTG GGACGCCGGC CTGCTGCTGG AACGCACCAT TCCGATCGCG
GCCGCCAAGG CCAAGCCCGG CACGCCGGAA TTCCGCGCCG AGCTGCGCGA CGCGCTGGAG
AACGTCAAGA ATCTCACCGG CGCGCAGGGC GTCTACAACA TGACTGCGGC CGATCATTCC
GGCTTCGACG CCCGCAGCAT CGTCACCATC GCGGTGAAGG ACGGCGCCTG GAAGCTGCTG
AAGTAA
|
|---|
| Protein sequence | MNKLKALLAA AVLASTAGAA SAQVKVGVIA SSTGPISVVG LQQKNTVALL PKTIGNLTVD
YIYMDDNSDP TQATKNVQKF LIEDKVDAII GPSGSPNAMA VLSFIADAKT VMLAPVGTTA
VVLPMDEKKK WVFKTTQNDN LVMDALVAHM KTNGVKTVAF IGTNDPLGAN FAKAFKAVID
KEGIKLVAEE TFSRADTSVA GQSLKILSAA PDAVLVGAAG ATTVLPEVTL VDQGYKGKIY
QTHGAATPEF IKLGGKKVEG TILAASPMLV QAQIGDDVPS KASGQAYIDA YTKVYGVAPG
TFGANVWDAG LLLERTIPIA AAKAKPGTPE FRAELRDALE NVKNLTGAQG VYNMTAADHS
GFDARSIVTI AVKDGAWKLL K
|
|---|
| |