| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3387 |
|---|
| Symbol | |
|---|
| ID | 3911189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 3871733 |
|---|
| End bp | 3872410 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637885290 |
|---|
| Product | phosphoglycolate phosphatase |
|---|
| Protein accession | YP_486994 |
|---|
| Protein GI | 86750498 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0546] Predicted phosphatases |
|---|
| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0781845 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAT CCCGCACCGT TGTCTTCGAC CTGGACGGCA CGCTGATCGA CACCGCGCCG
GACCTGATCA ATGCCCTGAA TTACATCCTC GTCCGCGAAG GCATGCCGGC GGTCCCGCTC
GCAAAGGCCC GCAATATGAT CGGGCAAGGC GCGCGGCGAT TGCTGGAGCG CGGCCTCGAA
CTCGACGGCC GCGTCATCAG CCCGGACGAC GTCAACCGCC TCGCGGTCGA TTTCATCGAC
TATTACGCCG CCAATATCGC CGTCGAGTCG CGGCCGTTCG AGGGACTGGA ACAGACGCTC
GATGCGCTCG CCGGCCAGGG CTACCAGTTC GCGGTGTGCA CCAACAAGCT GGAATGGCTG
TCGAAGCTGC TGCTCGACCA GCTCGGCCTG AGCTCCCGCT TCGCCGCGAT CTGCGGCGCC
GACACCTTCG GCGTCGCCAA ACCCGACCCG GCGATCCTGC GCGAGACCAT TGCCAAGGCC
GGCGGCGCAC TGGCCTCGGC GGTGATGGTC GGCGACGCCG GACCGGATGT CGGCGTCGCG
CGGCGCGCCG GCATCCCGGT GATCGGCGTC GAGTTCGGCT ACACCGAGGT TCCGATCGCC
GAGCTCAAGC CGGACCGGCT GGTCGGCCAT ATGCGCGACT TGCCGAACGC CGTCACGCAG
CTGCTGCCGC CGGCCTGA
|
|---|
| Protein sequence | MSTSRTVVFD LDGTLIDTAP DLINALNYIL VREGMPAVPL AKARNMIGQG ARRLLERGLE
LDGRVISPDD VNRLAVDFID YYAANIAVES RPFEGLEQTL DALAGQGYQF AVCTNKLEWL
SKLLLDQLGL SSRFAAICGA DTFGVAKPDP AILRETIAKA GGALASAVMV GDAGPDVGVA
RRAGIPVIGV EFGYTEVPIA ELKPDRLVGH MRDLPNAVTQ LLPPA
|
|---|
| |