Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1111 |
Symbol | |
ID | 3910197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 1279979 |
End bp | 1282684 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 637883004 |
Product | hypothetical protein |
Protein accession | YP_484732 |
Protein GI | 86748236 |
COG category | [S] Function unknown |
COG ID | [COG5373] Predicted membrane protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.661792 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.626609 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTCGAAC TGCTGACGCT CGTGATCGCC CTCGTCGCGC TGGTGCTGGC GCGCAAGGCG AACAACCGCT CCCAGGAATT GCAGGCGAGG CTCGCCGCGC TCGAAGCGGG ACAGCCGCTG ACGGCGCGTG CGCAGCCCGC GGCGACCGCG GCGAGTGGTA GCGCCGTCGC GGAGGCATCG CTCGCACCCG AGCTTCAGCC GGAAGTCGCC GAGGCGGGGG CGGCCGAGGC GGCGACGGAA TCGGCATCCG CCGGGAGCGC CGCGTCGGCA GACGCATCGA TCGATACGTC CGCGCCGGCC GAACCGCCGG CTGCACCATC AGCCAAGCCC GGCTTCGAAG AGCGCATCGG CACCCGCTGG GTGGTGTGGG TCGGCGGGCT GACGCTGGCG CTCGGCGGCT TCTTCATGGT GCGTTACTCG ATCGAACAGG GTCTGCTCGG CCCCGGCGTG CGCGTGTTGC TCGGCGGCCT GTTCGCACTG GCGCTGCTCG GCGCCGGTGA ATGGACGCGA CGCAAGGAGG ACATCTCGAA CCTGCGCGCG CTGCCGATCG CCAACATCCC CGCGATCCTC ACCGCGGCTG GCACCGCCGT GGCATTCGCG ACCGTCTACG CATCCTATGC CCTGTACGAC TTTCTCGCTC CCGCCAGCGC CTTCATATTG CTCGGGCTGG TCGCGCTCGG CACGCTGGCT GCGGCGTTGC TGCACGGCCC GGCGCTGGCA GGGCTCGGCG TCGTCGCCGG CTTCGTCACG CCGCTGCTGG TGTCGTCGGA GACGCCCGAC TATTGGGCGC TGTACATCTA TCTCGCGGTG GTGACCGCGG CGTCGTACGG CCTCGCGCGA ATCCGGCTGT GGCGCTGGCT CGCCATGACC ACGATCGCGC TGGCGTTCCT CTGGGCGGTG GCCGGACTCG CAGGAGCGTC GCTGGGGCCG CTCGCGTTCC ACGTCATCGC CGGCTTCGTG CTCGCCGCAC TGCTCGTTGT CTGCAACTTG CTGTTCGGCC CGTCGCTCGA GGACGGCCGA ATCGAGACGA TCTCGTCCGC CTCGCTCGCC GCGCCCGTGC TCGCGGCCGC GCTGATCGTC GTCGGCGAGG GCCATACCGA CTCGGCGATG ATCGTGTTCG CGCTGCTGGT CGCGGCGACG CTCGGCGTGG CGTGGCGCGC AGCGGCGGCG ACTGCGGCCG TCGGCGCCGC CGCGGTGCTG GTCGCGCTGG TGTTTCTCTC GTGGGTGATC CGCAGCGCGC CCGAATTACT TGCGTTGCCC GGCGGACCGC TGCCCGGAAT CGGCACCGAT CCGCTTGCCG GCTCGGTGAC GACACACCTG ATCACGGCTG CGATCTTTGC GCTCGGCTTC GGCGTCGCCG GGCTGCTGGC ACAGGGGCGA TCGACCAGTG CGATCGTCCC GGTGATCTGG TCGGCTGCGG GGGTGTTCAC GCCGCTGGCG TTGCTGATCG CGCTGTATGC GCGGATCGCC CATCTCGATC GCTCGATCCC GTTTGCCATT GTCGCGGTAC TCCTCGCCGC GGCTTACGGC GCCGCCACCG AATGGCTGAG CAAGCGCGAG ACCCGGCCCG GGCTCGCGAT CTCGGCGGCG CTGTACGCCA CCGGCACGCT CGGCGCGCTG GCGCTGGCGC TGACCTTCGC GTTGGAGAAG GGCTGGCTGA CGATCGCGCT GGCGCTGATG GCGGCCGGCA CGGCCTGGAT CTCGCTGCAG CGGCCGATTC CGTTCCTGCG CTGGCTCGCC GCGATCCTCG CTGGCATCGT CGTGCTGCGA GCCGGCTGGG AGCCGCGCAT CGTCGGAGAC GCGATCGGCA CCACGCCGAT CTTCAACTGG CTGCTGTGGG GCTATGGCGT GCCGGCGGCA TCGTTCTGGC TCGCCAGCTT CTGGCTTCGC AAGCGCGGCG ACGACGTGCC GCTGCGCATG ATGGAGTCCG CAGCGATCCT GTTCACCGTG CTGCTGGCAT TCCTGCAGAT CCGCCACGCC GTCAACAACG GCGATGTCTA TCGCGACAGC GCCGGGCTGG TCGAGGTCGC CCTGCAGGTC TGCGTCGCGC TGGCGATGGC GATCGGCCTC GAACGGCTGC GGCGACGCAG CCGCAGCGTC GTTCACAACG TCGCGGCGAT CCTGCTCGCG GTGTTCGCCG CACTCGCCAG CATCGGCGGC CTGCTGCTGT TCGAAAATCC TCTGTTGTGG TGGTCCGGCG AAATCGGCGG CCTGCTGCTG AACGAGCTGC TGCTCGGCTA TGCGGCTCCG GCGCTGCTGG CGCTGCTGCT GTCCTACGCG GTCGCGGGGC TGCGCCGACC GTCCTATGCC AACAGCTTCG CGGCGCTCGC GCTGATGATG GGGCTGGCCT ATGTGACGCT GGAAATCCGT CGGCTGTATC ACGGCCCCGT GCTGTGGCGC GGCCTCACCA CCGATGCCGA GCAGTACACC TATTCGCTGG CCTGGCTCGG CTGCGGCGTG CTGCTGCTCG GCGCCGGCAT CCTGTTCAAC TCGCAGCGCG CCCGGCTCGC CTCCGCGGTG GTGATCGGCC TCACCATCGT CAAAGCCTTC CTGATCGACA TGTCGACGCT GACCGGCGTG TACCGGGCGC TGTCGTTCAT GGGGCTCGGC CTGGTGCTGG TCGCGATCGG CTGGCTGTAT CAGCGCGTCT TGTTTCGGCC GCGTGCTCTG CCATCCGGTG CAGCGGCCAG CGACGCGAAG GATTAG
|
Protein sequence | MFELLTLVIA LVALVLARKA NNRSQELQAR LAALEAGQPL TARAQPAATA ASGSAVAEAS LAPELQPEVA EAGAAEAATE SASAGSAASA DASIDTSAPA EPPAAPSAKP GFEERIGTRW VVWVGGLTLA LGGFFMVRYS IEQGLLGPGV RVLLGGLFAL ALLGAGEWTR RKEDISNLRA LPIANIPAIL TAAGTAVAFA TVYASYALYD FLAPASAFIL LGLVALGTLA AALLHGPALA GLGVVAGFVT PLLVSSETPD YWALYIYLAV VTAASYGLAR IRLWRWLAMT TIALAFLWAV AGLAGASLGP LAFHVIAGFV LAALLVVCNL LFGPSLEDGR IETISSASLA APVLAAALIV VGEGHTDSAM IVFALLVAAT LGVAWRAAAA TAAVGAAAVL VALVFLSWVI RSAPELLALP GGPLPGIGTD PLAGSVTTHL ITAAIFALGF GVAGLLAQGR STSAIVPVIW SAAGVFTPLA LLIALYARIA HLDRSIPFAI VAVLLAAAYG AATEWLSKRE TRPGLAISAA LYATGTLGAL ALALTFALEK GWLTIALALM AAGTAWISLQ RPIPFLRWLA AILAGIVVLR AGWEPRIVGD AIGTTPIFNW LLWGYGVPAA SFWLASFWLR KRGDDVPLRM MESAAILFTV LLAFLQIRHA VNNGDVYRDS AGLVEVALQV CVALAMAIGL ERLRRRSRSV VHNVAAILLA VFAALASIGG LLLFENPLLW WSGEIGGLLL NELLLGYAAP ALLALLLSYA VAGLRRPSYA NSFAALALMM GLAYVTLEIR RLYHGPVLWR GLTTDAEQYT YSLAWLGCGV LLLGAGILFN SQRARLASAV VIGLTIVKAF LIDMSTLTGV YRALSFMGLG LVLVAIGWLY QRVLFRPRAL PSGAAASDAK D
|
| |