Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4606 |
Symbol | |
ID | 3370155 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 5462253 |
End bp | 5464175 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637654975 |
Product | Outer membrane autotransporter barrel |
Protein accession | YP_237674 |
Protein GI | 66047833 |
COG category | [I] Lipid transport and metabolism [R] General function prediction only |
COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.310199 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCAAGA CATCGAGGCG CTGGCCCTTC GCGGCCTGCC TGTTATCGCT TGCCTGCGGC ACCGCTGCTG CCGCGCCCTA TTCGACCATG GTGGTGTTCG GCGACAGCCT GGCCGATGCC GGGCAGTTTC CCGACACCGC CGGGCCCAGG GGCTCTACGC TTCGGTTCAC CAATCGGGTC GGCCCCACTT ATCAGGACGG CAGTGGAGAG GTGTTCAATC TGAACTCGTC GACGCTGATC GGCAGGATGC TCGGTGTGCC GGCAGGAGAT CTGGCGGCTT CCACGTCGCC GGTCAATGCT GCGCTGGGCG CACCCGATGG CAATAACTGG GCAGTCGGCG GCTATCGGAC CGACCAGATT CTTGACTCGA TCAACTCGCA ATCCACCGTC GTCGACCCGA ACACCGGCAC ATTGCTGCGC AGCCGGACCG GTTATCTGCC CGCCAACGGT TTTCGCGCCG ACCCCAACGC GCTTTATTAC CTGACCGGAG GCGGCAACGA CTTCCTGCAG GGTCGTGTGT TGAGTGCCAG CAGCGCCGCG CAAGCTGCCA ATCAGCTGGC TGACAGCGCG CAAGCCCTGC AACAGGCCGG TGCGCGCTAC ATCATGGTCT GGTTGCTGCC GGATATCGGT AAAACGCCAG CCTTGAGCGG TTCGCCACTG GCTTCGGCAA CTTCCGCACT CAGCGCGGGC TTCAATCAGC AGTTAGTCAG CCGACTGGCG CAGATCAATG CCCAGATCAT TCCGCTGAAT GTTCCATTGC TGATCAATGA AGTCCTCGCC GAACCGGCAC GCTTCGGGTT CGATCCCAAC GAGAATCTGG TCAGTACCTG TTTCAGCGGC AATAGCTGCC GGGAAAGCAC CACCAACGGC CGGTCCAGTG CGACGCCGAA TCCGAACCGG CTGTTCTTCA ACGATCGCGT GCATCCGACC GAGGCCGGGC AGAGGTTGCT GGCCGACTAC GCCTACTCGC TGCTTTCGGC CCCCTGGGAA ATCTCCCTGC TGCCGGAAAT GGCCAATGGC ACGCTGCGCA TGCATCAGGA CGAGATCCGC GCCCAGTGGC TCAGCGACTG GGGCAACTGG CAAGGCATAG GACAGTGGCA GAGCATGCTT TCGGCAGGCG GTCAGAAAAT GGACTTCGAC GCGCAGGACA GTTCGGCTGA TGCTGACGGA AGAGGCTATA ACCTGACCAT CGGCGGCAGC TACCGATTTG CCGAAAACTG GCGCACTGGG GTTGTCGCCG GGGCGTATCG CCAGAGTCTC GAGGCAGGGC CAAGGGATTC GGACTACAAA CTCAACAGCT ACATCGCCAC TGCGTTCCTG CAGTATCAGG CCAACCACTG GTGGGGTGAT CTGGCGGTGT CGGGCGGCAA ACTGGACTAC GAAAATGCCG AGCGCAAGTT CGCGCTGGGC GTCAGCGAAG GTCAGGAAAA AGGCGATACC GACGGCGAAA TGTGGGCTGT CAGCGGGCGG GTCGGTTTCG ACATCGCGGG CCCGACCAGT CGCTGGCATC TGTCGCCTTT CGTCAGCGCC GATTACGCGC ACATCAATGT CGACGGCTAC TCGGAAAAAG GCGACCGCTC GACCGCGCTG ACCTTCAGTG ACCAGACGCG CAAATCGCGG CGTGCAGGCG TGGGTGTGCA GGGCAAATTC CAGGTGACAC CGAGCACACA GGTATGGGGC GAAGTGGCCC ATGAAAGGGA GTTCGAGACC GATCAGCAGG ACGTGACCAT GGCGCTCAAC AGCGTTCAGT CGGTCGGTTT CACGCTGCAA GGCTACACAC CGCAACGCGA CCTGAACCGG GCCACGCTGG GCGTCAGCCA GAAGCTGACT CAGGACCTGA CACTGCGCGG CAATTACAAC TGGCGCAAGA ACGACGACGT GACCCAGCAA GGGGTGAATG TCGCGTTGAG TCTGAGTTTC TAG
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Protein sequence | MTKTSRRWPF AACLLSLACG TAAAAPYSTM VVFGDSLADA GQFPDTAGPR GSTLRFTNRV GPTYQDGSGE VFNLNSSTLI GRMLGVPAGD LAASTSPVNA ALGAPDGNNW AVGGYRTDQI LDSINSQSTV VDPNTGTLLR SRTGYLPANG FRADPNALYY LTGGGNDFLQ GRVLSASSAA QAANQLADSA QALQQAGARY IMVWLLPDIG KTPALSGSPL ASATSALSAG FNQQLVSRLA QINAQIIPLN VPLLINEVLA EPARFGFDPN ENLVSTCFSG NSCRESTTNG RSSATPNPNR LFFNDRVHPT EAGQRLLADY AYSLLSAPWE ISLLPEMANG TLRMHQDEIR AQWLSDWGNW QGIGQWQSML SAGGQKMDFD AQDSSADADG RGYNLTIGGS YRFAENWRTG VVAGAYRQSL EAGPRDSDYK LNSYIATAFL QYQANHWWGD LAVSGGKLDY ENAERKFALG VSEGQEKGDT DGEMWAVSGR VGFDIAGPTS RWHLSPFVSA DYAHINVDGY SEKGDRSTAL TFSDQTRKSR RAGVGVQGKF QVTPSTQVWG EVAHEREFET DQQDVTMALN SVQSVGFTLQ GYTPQRDLNR ATLGVSQKLT QDLTLRGNYN WRKNDDVTQQ GVNVALSLSF
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