Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_4089 |
Symbol | |
ID | 3369625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 4874589 |
End bp | 4876625 |
Gene Length | 2037 bp |
Protein Length | 678 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637654447 |
Product | PAS |
Protein accession | YP_237157 |
Protein GI | 66047316 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5000] Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.465781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTTGC GCCAACGCCT GGAAAACCTG CCCGTCGGCC AGAAACTGCT GGCCGCCCTG CTGGTCCTGA TGACCACCGT ACTGCTGGTC GCCAACCTGA CCTTCATCAG CGCGGCCTAT TACATCTCTC AGGAGGCGAT GGCTCCGCAG GCCCTGCAGA CCATCGGCCG GCTGATCAGC AGCGCCAATC TCAACGAGCG GGCCTTGTAC TCGCCTGATG AGGCGCGCGC GCTGCTCAAG GAGCTGAGAA GCTACGGGCC GTTGCGTGCC GCAGCCCTGT ATGACAACAA CGGCGAGCGG CTTGAACAGA TGCATCAGGG CGAAAGCCTT GAGCTGCCCA GACGCTTTAA AGACCTGGAT AGCTGGCGCC TCACCGAATT TCGCAGCACG CAAGTCATCA CCGTACCCAA AGGTGACGAG CCGCCAGGGC ATCTGCTGCT GGTGGCCAGC AGCGAGCTGC CACCGGCGTT CTACACCGGC ACGCTCACCG CCAGCCTGGG CATTCTGGTG TTCAGCGTGT TGCTGTGGCT GGTGGTGGCG CGGCAGATTC GCCGACTGAT CACCGAGCCC ATTTACCAAC TGGAAGAATT GTCCCGGCAG GTGACCCGCG AAGAGAACTA CGCACTGCGC GCAGAACCCG GCAACGATGA TGAAATCGGC AGTCTGGCCG AGGCGTTCAA TACCATGCTG TCGCGTATCG AAGCGCGTGA ACAGCAACTC AAGCGCGCGC GCGACGACTC GCAGGAAGCC TACGATCAGG CCCAGGGGCT GGCCGAGGAA ACCCGCCACA CCAACCGCAA GCTGGAGCTG GAAGTCCAGG TGCGCAGCAA GATCGAGAAG AAGCTCACCG GCTTTCAGAA TTACCTCAAC AGCATCATCG ACTCGATGCC CTCGGCGATG ATTGCGCTGG ATGAACAGTT GTACGTCACC CAGTGGAATC AGGAAGCCAC AGCACTGTCC GGCACCACAC TGGACGAAGC GCTGAACCAG CCGATCTTCC TGGCCTTCGA GCCGATGCGC TCGTTTCTGC CGCAGATCAA GCACACCGTC GAGCGCCACA GCGTGACCAA GATCGAGCGC GTGACCTGGA TCAAGAATGA CGAGCCCCGC CACTACGCTC TGACGTTCTA CCCGTTGACT GGCGATGCCG GGCGCGGCGT GGTGATCCGG ATCGATGACA TCACCCAGCG CATATCGCTG GAAGAAATGA TGGTGCAGTC GGAAAAAATG CTGTCTGTCG GCGGTCTGGC AGCAGGCATG GCGCATGAGA TCAACAACCC GCTGGGCGCC ATACTGCACA ACGTACAGAA CATACGTCGG CGGCTGTCCC CGGAACTGCC GAAGAACATC GAGCAGGCCG AGGCCGACGG CATCGATCTG GCGCAGGTCA ACCATTACCT GGAAAGCCGC GAAGTGCCGA AACTGCTCGA CGGTATTCAA CAGGCCGGTG CCAGGGCCGC AAAAATTGTC AGCCACATGC TCAATTTCAG CCGCCTGAGC AGTCGGCAGT TATCGCCCTG CGACTTGCCG GCCTTGATCG ATCAGGCCGT GGAGATCGCC AGTAACGACT TCGATCTGAC CATCGGCTTC GACTTCAAGG GTCAGCACAT CATCCGTCAG TTCGACCCCG AACTGGGTCC GGTACCATGC ATCGCCAACG AGCTGGAGCA GGTGCTGCTG AACCTGCTGA AGAACGCCGC GCAGGCCATC CACCAGCGGC CGGAGAGCGA AGAGCCTGGG CGCATTACCC TGCGCACGCG TCTCAATCCG CCGTGGGCCG AGATTCAGGT GGAGGACAAT GGCATCGGCA TGTCGGAGAG CATCCGCAAG CGTACGTTCG AGCCGTTTTT CACCACCAAG GAAATCGGCC AGGGCACCGG GCTGGGTCTG TCGGTGTCCT ACTTCATTGT CACCAACAAC CACAAAGGCC AGATGGAGGT ACATTCCTCT CTCGGCACAG GCACCTGCTT TACGCTGCGT CTACCGCTGG TGGCCAACCC GGTCAGCGTT CAGCAGCAGG TCATTTCAAA ATCCTGA
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Protein sequence | MPLRQRLENL PVGQKLLAAL LVLMTTVLLV ANLTFISAAY YISQEAMAPQ ALQTIGRLIS SANLNERALY SPDEARALLK ELRSYGPLRA AALYDNNGER LEQMHQGESL ELPRRFKDLD SWRLTEFRST QVITVPKGDE PPGHLLLVAS SELPPAFYTG TLTASLGILV FSVLLWLVVA RQIRRLITEP IYQLEELSRQ VTREENYALR AEPGNDDEIG SLAEAFNTML SRIEAREQQL KRARDDSQEA YDQAQGLAEE TRHTNRKLEL EVQVRSKIEK KLTGFQNYLN SIIDSMPSAM IALDEQLYVT QWNQEATALS GTTLDEALNQ PIFLAFEPMR SFLPQIKHTV ERHSVTKIER VTWIKNDEPR HYALTFYPLT GDAGRGVVIR IDDITQRISL EEMMVQSEKM LSVGGLAAGM AHEINNPLGA ILHNVQNIRR RLSPELPKNI EQAEADGIDL AQVNHYLESR EVPKLLDGIQ QAGARAAKIV SHMLNFSRLS SRQLSPCDLP ALIDQAVEIA SNDFDLTIGF DFKGQHIIRQ FDPELGPVPC IANELEQVLL NLLKNAAQAI HQRPESEEPG RITLRTRLNP PWAEIQVEDN GIGMSESIRK RTFEPFFTTK EIGQGTGLGL SVSYFIVTNN HKGQMEVHSS LGTGTCFTLR LPLVANPVSV QQQVISKS
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