Gene Psyr_3888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsyr_3888 
Symbol 
ID3369423 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. syringae B728a 
KingdomBacteria 
Replicon accessionNC_007005 
Strand+ 
Start bp4629580 
End bp4630218 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content56% 
IMG OID637654245 
Productendonuclease III/Nth 
Protein accessionYP_236956 
Protein GI66047115 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.324947 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGCCG CAAAACGCCA GGAAATCTTT CGCAGGCTGC ATGAGGACAA TCCGGACCCA 
AAAACCGAAT TGGCCTACAC CACGCCTTTC GAACTGTTGA TAGCCGTCAT CCTTTCCGCC 
CAGGCCACCG ACGTAAGCGT CAATAAGGCG ACTGCCAGGC TCTACCCGAT AGCCAACACC 
CCACAGGCCA TCTATGAACT GGGTGTAGAG GGGCTTTCCG AGTACATCAA GACCATCGGC 
CTCTACAACA GCAAAGCCAA AAACGTGATC GAAACCTGCC GCATGCTGGT GGAGCTGCAC 
AACGGTGAAG TACCGCAAAC CCGAGAAGCA CTCGAGGCGT TGCCGGGCGT CGGGCGCAAA 
ACCGCTAACG TGGTGCTCAA CACCGCTTTC CGCCAGATCG CGATGGCGGT GGACACGCAT 
ATCTTCCGCG TCAGCAACCG CACAGGCATC GCGCCAGGGA AAAATGTGGT GGAAGTGGAA 
AGGCAACTGA TGAAATTTGT GCCGAAAAAC TACCTGCTCG ACGCTCATCA CTGGCTGATT 
CTGCACGGGC GCTATGTTTG CCAGGCCCGT AAACCGCGAT GTGGCAGTTG CCGTATAGAA 
GACCTGTGCG ATTACAAGGC AAAAACGTCC GACGATTGA
 
Protein sequence
MNAAKRQEIF RRLHEDNPDP KTELAYTTPF ELLIAVILSA QATDVSVNKA TARLYPIANT 
PQAIYELGVE GLSEYIKTIG LYNSKAKNVI ETCRMLVELH NGEVPQTREA LEALPGVGRK 
TANVVLNTAF RQIAMAVDTH IFRVSNRTGI APGKNVVEVE RQLMKFVPKN YLLDAHHWLI 
LHGRYVCQAR KPRCGSCRIE DLCDYKAKTS DD