| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_3542 |
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| Symbol | |
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| ID | 3369069 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 4219845 |
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| End bp | 4220594 |
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| Gene Length | 750 bp |
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| Protein Length | 249 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637653893 |
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| Product | Short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_236612 |
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| Protein GI | 66046771 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0247071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.033589 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCG AAGGAAAGAT AGCGGTTGTC ACCGGGGCGT CCAAAGGCAT AGGTGCCGGG
ATTGCCAAAG CATTGGGCGC AGAGGGCGCA AGGGTCATCG TCAATTACGC CACCGGCAAG
GCGGATGCGG ACGCCGTCGT CGCCTGGATC GCAGAGCACG GCGGCTCCGC GTTTGCGGTA
CAGGCAGACA TGAGCCAGTC AGCAGACGTG ATACGCCTGT TCGAAACGGT CGGCACGAAG
TACGGCGCTC TGGACATTCT GGTCAACAAT GCGGGTGTCG CTGTGTTCCA GATGATCGAC
GACCTGACTG AAGAGGCTTT CCACACGCAA TTCAACCTGA ACGTGCTGGG CTACCTGCTT
GCAGTGCGAG AGGCCGTCAA ATTGTTGGGG CCGACCGGCA GCATCATCAA TATCAGCTCG
ATTCTCAGCA CCGACCCTTA CCTGGCGTCG AGCGTGTACG CGGCGACCAA GGGCGCGGTC
GATACCTTGA CCTTCGCGCT GGCCAGAGAG CTGGGCGCGC GGGGCATCAG GGTCAACTCG
ATCCTGCCGG GGCACACCAA CACCCCGGCA ACCCATGGGC ATTTTGCCGG TGAGTTAGGT
GAGAAGATTC TGGCTGGAAC ACCCTTGGGT CGTTTTGGAG AGCCCGAAGA TATCGCCCCC
TTGGCTGTGT TTCTGGCGTC GCAGGACTCG CACTGGGTCA CCGGCGAATC CATCCGCGCT
TCGGGCGGGG TCAGGGGCGT CGGTTACTGA
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| Protein sequence | MKLEGKIAVV TGASKGIGAG IAKALGAEGA RVIVNYATGK ADADAVVAWI AEHGGSAFAV
QADMSQSADV IRLFETVGTK YGALDILVNN AGVAVFQMID DLTEEAFHTQ FNLNVLGYLL
AVREAVKLLG PTGSIINISS ILSTDPYLAS SVYAATKGAV DTLTFALARE LGARGIRVNS
ILPGHTNTPA THGHFAGELG EKILAGTPLG RFGEPEDIAP LAVFLASQDS HWVTGESIRA
SGGVRGVGY
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