Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_3385 |
Symbol | |
ID | 3368912 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 4044431 |
End bp | 4045624 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637653736 |
Product | TPR repeat-containing protein |
Protein accession | YP_236455 |
Protein GI | 66046614 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG4235] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.469456 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGATT TCTGGATGGC AGCCGGGCTG TTGCTGCTGG TTGCGCTGAG CTTCTTGCTG ATTCCGCTGC TGCGCGGCCA TCGCGCGCAA CGGGAAGAAG ACCGCACGGC TCTGAACGTG GCGTTGTATC AGGAGCGACT GAACGAATTG CAGGTTCAGC AGGAACAGGG CGTGTTGTCG GTGGCGCAAC TGCAGGCTGC ACGTACCGAA GCAGCGCGCG AGCTGCTTGC CGACACCGAA GGTGCGGAGC CCGACCGGAC TTCGCGCCTG GGCAAGCCCT TGCTGGTGCT TGCTGCGCTG CTGGTCCCGA TGTTGGGGCT GGCGGGCTAT CTCCAGCTGG GGGCTAGCGA CCGGGTTGAA CTGAGTCGCG AATTCGCTCG ACCACCGACC TCGCTGGCAG ACATGACCCA GCGTCTGGAG CGCAGCGTGC AGGCTCAACC GGACTCAGCC GAAAACCTGT ATTTTCTGGC GCGCAGCTAC ATGGCGCAGA ACCGCCCGGG TGATGCCGCG CAGATGTTCG AGCGTTCGGT AGCGCTGGCC GGACGGCAGC CCGAGTTGCT CGGACAATGG GCTCAGGCGC TGTATTTCGC CAGCGACAAG CACTTCACAC CCCAGGTGCA GGCGCTGACC GACGAAGCGC TGCAGGCTGA CCCCAGGGAA GTCACCAGCC TTGGTCTGCT GGGGATTGCC GCTTTCGAAA CTCAGCGCTA TCAGGCGGCG GTGGATTACT GGACCCGGTT GCTCGCGGCA CTGCCCGCAG ATGACGCATC GCGTTCGGCA CTGGAAGGCG GCATTGCCCG CGCCAGAGAT AACCTCGCCA AACGCGCGGC AGACGCGGCG CCGGCAGTTA AGGCGAAGTC GATAAAAATT CATGTCGAGC TGGCTGCGGC GCTTCAAGGC AAGGTAAGGC CGAACGACAG CGTGTTCATC TTCGCCCGCG CCATCAATGG CCCGGCGGCG CCTTTGGCGG TCAAACGCAT TACCGTGGCG GACCTGCCTG CCGAGGTGGA ACTGAGCGAT GCCGACGCAA TGATGCCGCA ACTGAACCTG TCGAACTTTG CGCAAGTCCA ACTGGTTGCG CGAGTGTCTC GCGCAGGGCA GCCAACCACC GGTGAGTGGG TCGGCCGCAG TCAGCCACTG GCCAGTGATA CTGCGGCGCA GCAGGCGTTG ACCATTGACA GTCCGGATAA CTAG
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Protein sequence | MIDFWMAAGL LLLVALSFLL IPLLRGHRAQ REEDRTALNV ALYQERLNEL QVQQEQGVLS VAQLQAARTE AARELLADTE GAEPDRTSRL GKPLLVLAAL LVPMLGLAGY LQLGASDRVE LSREFARPPT SLADMTQRLE RSVQAQPDSA ENLYFLARSY MAQNRPGDAA QMFERSVALA GRQPELLGQW AQALYFASDK HFTPQVQALT DEALQADPRE VTSLGLLGIA AFETQRYQAA VDYWTRLLAA LPADDASRSA LEGGIARARD NLAKRAADAA PAVKAKSIKI HVELAAALQG KVRPNDSVFI FARAINGPAA PLAVKRITVA DLPAEVELSD ADAMMPQLNL SNFAQVQLVA RVSRAGQPTT GEWVGRSQPL ASDTAAQQAL TIDSPDN
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