Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2780 |
Symbol | |
ID | 3368298 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 3364992 |
End bp | 3368477 |
Gene Length | 3486 bp |
Protein Length | 1161 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637653129 |
Product | Phage tail tape measure protein lambda |
Protein accession | YP_235857 |
Protein GI | 66046016 |
COG category | [S] Function unknown |
COG ID | [COG5281] Phage-related minor tail protein |
TIGRFAM ID | [TIGR01541] phage tail tape measure protein, lambda family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0242921 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACCA TTGCAGAACT CGGGATCAAG GTTGATTCCG GCGATGCCGC GCAGGCCGCT ACCGATCTGG ACAAGCTGGC TGCCGCTGGC GGCCGGGCAG AGAAAGCCGC TGATGGGGTT TCCTCGGGCT TCGACAAAGC ATCGACTGCG GCGTCGAGCC TGTCCTCGGC CGAGGGGAAG CTCAACGAAA CTACGGATCA GGCGATCGCT CGCCTCACAG CGATGGCCAA GGCTTCGCTG GATTCGAGCG AGTACTACCA GCGCCTTACA ACCAGTGTCA CCGGAAACAC GGCGGCTGTG GACGCTTCAA GCTCTTCTGC CAGCAGCCTG GCAGCGCTTC GGCGTCGATT GCAGGCTGAT TCTGATGCCT TGGTAGGGTC GACCGACCAA CTTGCTGAAT CCACGAAGAA GGCAGCGGCT GCTACCGGCG TTGAGGCTGA AGGGCTTCAA GCGCTGCTGG GTAAAATCAA CCCTACGCTG ACAGCGCTCG GCAAACTTGA TGAGCAGCAG GCACAGCTCC AGAAATACAA GAACGCTGGG CTCATCGATG CCGATACGTT CAAGGAGTAC TCCACCCGGA TTGACGCGTC CCGTCAGAAG CTTGGTGAGT TCGGTGAAAG CGTCAAAAGC GCGGGCGTAT CAGCTGCACA GACTCAGGCT GCGTTGCGTC AGTTGCCCAG TCAGTTCAGC GATATCTTCA CAAGCCTCAT AGGTGGGCAA AATCCGCTGC AGGTTTTCCT CCAGCAAGGT ATGCAGATCA AAGACTCGTT CGGTGGTATT GGACCGACGA TTGATGTCCT CGGCGGAAAG ATCAAATCCA TTCTCGGTAT AGGCGGTGGA ATCGGTTCGA TTGGTGACGC CTTGCAAGCA GTAGGTAGCG GCGGTAAGGC TGCTGCAGAA GGTGCTGAGG CTGCGGGCGA TGGTATCGGA AGCCTTGCGG AGGGGGCGAA CACGGCAGCT GACGCTGGCA AGAACGCCAA AGAGGCAGCT GATGCGCTCA GGGCGGCAGG GGGTGGTCTT AGCGTTGGTA TTGGTGCAGT CCTCGTAGGT GCCGCAGCTG CAGCCGCCGC GCTCGTTGCA TTGGGGGTGG CATATAAGCA GGGGAGCAGC GAGGCAACCG CGTATACCAC TGCCTTGATC ATGACAGGCA ACACAGCAGG CACAACCGCT GGACAGCTCA GCGACATGGC GAGAGCTGTT TCCAGCGCCA ATGGGACAGT GAATGAAGCT TCGCAGACCC TTACCTTGCT TTCTGGGTCG ACCCGGATCT CAGCATCGTA TTTTCAGATG ATTGCTACTG CCGCCGCCAA CATGGAAGAC GCGACAGGGA AGTCGACTGC GGAGACCGTT AAGAACTTCG AGAAGCTCGC CAAGGAGCCT CTGAAGGCCT CATTGGAGTT CACGGAGCAG TTGAACTACC TGACTGCGGC GACCTATTCG CAGATTGCCG CGCTTGAGCG CCAAGGGCAG ACCCAGGCAG CAGCAGAGGT GGCATTTAAG TCGTATGCCG ACGCGACAAA TACCCGGACC GAACAAATAA CCGCGAACCT TGGGATTCTT GAGGCTGGCT GGAAAAAAGT AGGCGACAAC GCGAAACTTG CTTGGGACGC GATGCGGGAT GTCGGGCGAG ATCAAAGTCT CGACGAGCAA ATAACCAACA CCAAAAAGAT TCTTGAGGAT CGGAAAACAG GCTGGCTGTC CGGTCTGTTT GAGGGAAGCG AATCCACAAG GGTGCTGCAG GATCGGCTTA AGCTTCTCGA GAAAGCTCGA GACGTTCAGG CAGGAGAGGC CAAGAAAACT GGTGAACAAC AAAGCGCACA GCGCGCCGCG GTGCTTGCTG CGACGAAGGT CGACGAGCTG GAAAAGTCGT CCAGGACTAA TGCGGAGAAA AGGTCAGAGG CTCTCAAGGC ATATGAGAGA AATCTGGAGG CGATTAGAAA GGTCAACCCG ACAGACGATC GCCTCAAGCC GGAAAACGTT TCAAAGATAA AGAGCAACAT CGCCGATCAA TTCAAGGATC CGGCGAAACC TACGTCCGCA TTGGATATGA CCGCGTTCAA CACAGCGCAA AATCAGCTCA AGTCGATAAA CGGTTATTAC GACGGCATCC AGAAGGAGTT GGAGGCGTCG CAGAAAGCCG GGCTGATTTC CGCTGAGTCT TACGCCAGCC AGCGTGCAGC AATCATAGAT CAGCAGAAAG GCGATATCAC TTCTGCCTAT CAGGTTGAAA TTGATGCGCT TGAGACGCTC AGGGGCAAGG CGTCTACCAG CGCTGAGCAG CGAATCCAGC TCGACCAAAA GATCGCCGAC GCTCGAACTT CGATGTTGGA GGCGCAGAAG AAAGCTGAGA CTGAACAGGA AGTTCTTGCC ACATCAGAAA AGGGCAGGCT CGAAAAACAG CGTTTGGCTG TGGCTGCCTA TACCGCAGCA CTGGAGCAGC AGGTAAAAAC CTTGCGCGAG CAGGGGCAGC GATCTGCTTC CTCTCTTGGC ATGGGGGATC GTCAGCGTGG GCTGACGGAC CAGCAGAACT CCGTAGATGA CCGGATTAAC CAGCAGAAGG TCGAGCTGGC CAACCAATAC GGTGATGGCT CTCGGGGGAT GAGCCTCGAC GAGTACAACC TGAAGCTGGC TGCGCTCAAC AAAAATCAGC AGGATCTACG CGACGCGGTC CAGGCCAGCT ATGACTACAT GACCGTTGCC CAGGGCAGTT GGAGTGCTGG CGCATCATCG GCCTTCCAGA ACTATCTGGA ATCGGCCAGG GACGTGGCCG GGCAGACCAA GAGCCTGTTC ACGAGTGCGT TCAGCAGCAT GGAAGATTCG GTCGCAAACT TCGCGATAAC TGGCAAGGGG TCGTTTTCAG ACTTTACCAA ATCAATCTTG GCCGACATGG CAAGGATTGC TACCCGTCAA GCAAGCTCAG CGCTGCTGAG CAGTCTGGTA GGTGCTGCCA CCAGCTATTT TACTGGCGGC ACCGGCAACG GGCTTGCATC AGGCTCGGCA GGCGCTATCT CATCAAACGC TGGCGCGAGC GCGGCAGGCT ACAGCAACTC AGCATTGAGC GGCTGGTCAG GAGTGGCCCA GGCCAAAGGC GGTGCCTGGT CCAACGGCGT GCAGATGTTC GCCAACGGCG GGGCGTTCAC CAACAGCATC GTCAGCAAGC CAACAGCGTT CGGCATCTCT GGCGGCGGAG TTGGGGTTAT GGGTGAGGCG GGCGACGAGG CAATCATGCC GCTCACTCGC ACTCCCAGCG GCCAGCTTGG CGTCCGCGCG CTGAGCGGAG GCGGCAGTAG CGAAAGCAAC ACCTACAACT TCCCCGTCTC GGTATCTGTC CAGACGTCTG GCGATTCGGG CAGCTCAAGC ACGCAGGAAG CGTCCACTCA GCTCGGCAAG GGCATTCAGC AGGCGGCAAA AACCGAGGCC GAGACTGCAA TCGCTCGCGC GCTGCAACCT GGTGGTTCGA TCTGGAGGCT CACAAATGGC AGGTAA
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Protein sequence | MTTIAELGIK VDSGDAAQAA TDLDKLAAAG GRAEKAADGV SSGFDKASTA ASSLSSAEGK LNETTDQAIA RLTAMAKASL DSSEYYQRLT TSVTGNTAAV DASSSSASSL AALRRRLQAD SDALVGSTDQ LAESTKKAAA ATGVEAEGLQ ALLGKINPTL TALGKLDEQQ AQLQKYKNAG LIDADTFKEY STRIDASRQK LGEFGESVKS AGVSAAQTQA ALRQLPSQFS DIFTSLIGGQ NPLQVFLQQG MQIKDSFGGI GPTIDVLGGK IKSILGIGGG IGSIGDALQA VGSGGKAAAE GAEAAGDGIG SLAEGANTAA DAGKNAKEAA DALRAAGGGL SVGIGAVLVG AAAAAAALVA LGVAYKQGSS EATAYTTALI MTGNTAGTTA GQLSDMARAV SSANGTVNEA SQTLTLLSGS TRISASYFQM IATAAANMED ATGKSTAETV KNFEKLAKEP LKASLEFTEQ LNYLTAATYS QIAALERQGQ TQAAAEVAFK SYADATNTRT EQITANLGIL EAGWKKVGDN AKLAWDAMRD VGRDQSLDEQ ITNTKKILED RKTGWLSGLF EGSESTRVLQ DRLKLLEKAR DVQAGEAKKT GEQQSAQRAA VLAATKVDEL EKSSRTNAEK RSEALKAYER NLEAIRKVNP TDDRLKPENV SKIKSNIADQ FKDPAKPTSA LDMTAFNTAQ NQLKSINGYY DGIQKELEAS QKAGLISAES YASQRAAIID QQKGDITSAY QVEIDALETL RGKASTSAEQ RIQLDQKIAD ARTSMLEAQK KAETEQEVLA TSEKGRLEKQ RLAVAAYTAA LEQQVKTLRE QGQRSASSLG MGDRQRGLTD QQNSVDDRIN QQKVELANQY GDGSRGMSLD EYNLKLAALN KNQQDLRDAV QASYDYMTVA QGSWSAGASS AFQNYLESAR DVAGQTKSLF TSAFSSMEDS VANFAITGKG SFSDFTKSIL ADMARIATRQ ASSALLSSLV GAATSYFTGG TGNGLASGSA GAISSNAGAS AAGYSNSALS GWSGVAQAKG GAWSNGVQMF ANGGAFTNSI VSKPTAFGIS GGGVGVMGEA GDEAIMPLTR TPSGQLGVRA LSGGGSSESN TYNFPVSVSV QTSGDSGSSS TQEASTQLGK GIQQAAKTEA ETAIARALQP GGSIWRLTNG R
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