Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_2298 |
Symbol | |
ID | 3367813 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 2670080 |
End bp | 2671906 |
Gene Length | 1827 bp |
Protein Length | 608 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637652648 |
Product | glycoside hydrolase family protein |
Protein accession | YP_235379 |
Protein GI | 66045538 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3387] Glucoamylase and related glycosyl hydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.0000521372 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCTGACT TTCCCGCAGA GGCGCAAAAC CGTATCGAGG ATCACGGCAT CATCGGCGAC ATGCGCAGTG CTGCGCTGAT TGCCAACACC GGCAGCATCG ATTTCTGCTG CTGGCCGGAC TTCGACAGCC CGTCGATTTT CACCGCGCTG CTGGACACCC CCGACGCCGG GATCTTTCAG CTGGCGCCCG ATCTGCCTGA CGCCAGGCGG CTGCAGATCT ATCTGCCGGA TACCAACGTC CTGCAAACCC GCTGGATCTC CGAGGACGCG GTGGTGGAAG TCACCGACCT GATGCCGATC GGCGAAGATC AGGATGATCT GCCGCGTATC GTGCGCCGCG TCCAGGTGCG TTTTGGCGAG GCCACGCTGC GCATGCGCTG CCGGGTGCGC ATGGATTACA GCCGTGCCCA CACCACCGCA CGAGTCGATG GTCAGGACAT CTGTTTCGAA GCCGCCGGGC AACCGGGCAT GCGTTTGTCG GCAACGACGC CGTTGCGTCT CGAGCAGCAC GACGCCGTGG CCGAATTTCA TATGCACAAG GGCCAGACCA TCGAGTTCAT TCTCGGCGGA ATCGATGATT CGAATGTCGC TGCTGGCCGC TGCTCGCGCT ATTTCGATGA CACCTTGAAG TTCTGGCGGC GCTGGTCCGG GCAATCGCAA TACACCGGGC GCTGGCGTGA AATGGTCACT CGTTCGGCGC TGGCCCTCAA GCTGCTGACC TCGCGCAAGC ATGGCGGCAT TGTTGCCGCT GCGACGTTCG GTTTGCCGGA AACCGAGGGC GGCGAGCGCA ACTGGGATTA CCGCTACACC TGGATACGTG ACGCGTCGTT CACCGTGTAT GCATTCATGC GCCTGGGCTA CACCGATGAA GCCAATGCCT TCATGAGCTG GGTACGCGGA CGACTGGATG ACTGCTGCGA ACAGACCGAG AAGCTCGGCA TTCTCTATGC GCTGGATGGC CATGCAGAGC TGCCGGAAGA GCATCTCGAT CACCTGTCCG GCTACGGCGG TGCGCAGCCG GTACGTATTG GCAACGAAGC GTACAAGCAG GTTCAGCTGG ACATCTACGG CGAGCTGATG GACGCCGTGT ACCTGGCCAA CAAATACGGC GACGCCATCT CCCATGACGG CTGGCAGCAT GTGGTGCGCC AGGTCGACTA TGTGTGCGAG CACTGGAACG ACCGGGACGT GGGTATCTGG GAAATGCGCG GCGGCGATCA GCACTTCCTG CACTCGCGGC TGATGTGCTG GGTAGCGCTG GACCGGGCAC TGCGCCTGGC CTTCAAGCGT TCGCTGTCGG GGCCGTTCGA ACGCTGGACC AAGGTGCGCG AGGAGATCCA CAACGATATC TGGAAGAACT TCTGGAACGA CGACCTGGGT CACTTCGTGC AGCACAAGGG CAGCCGCAAT CTGGATGCCT CGATGTTGCT GATGCCATTG GTACGTTTCG TCGGTGCCAA CGATCCCAAG TGGCTGGCGA CGCTGGATGC CATCGAGGCC GCGCTGGTGC GTGACGGGAT GGTGTTCCGT TACCGCAACG ACGACGATCA TGATGACGGT CTGGCAGGTG AAGAGGGCGC CTTCGTGGCT TGCTCGTTCT GGTACGTCGA GTGTCTGGCC CGTGCCGGCC GGGTCGAACA GGCGCATCTG GAGTTCGAGC AGTTGCTGCG CTACGCCAAT CCGCTGGGCT TGTACGCCGA GGAATTCGAC GCGCATGCTC ATCACCTCGG CAATACGCCG CAGGCCCTGA GCCATCTGGC GCTGATCAGT GCGGCCAGTT TTCTGGACCG CAAACTGGGC GGTGGACAGG CGCTCTGGCA GCCTTGA
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Protein sequence | MADFPAEAQN RIEDHGIIGD MRSAALIANT GSIDFCCWPD FDSPSIFTAL LDTPDAGIFQ LAPDLPDARR LQIYLPDTNV LQTRWISEDA VVEVTDLMPI GEDQDDLPRI VRRVQVRFGE ATLRMRCRVR MDYSRAHTTA RVDGQDICFE AAGQPGMRLS ATTPLRLEQH DAVAEFHMHK GQTIEFILGG IDDSNVAAGR CSRYFDDTLK FWRRWSGQSQ YTGRWREMVT RSALALKLLT SRKHGGIVAA ATFGLPETEG GERNWDYRYT WIRDASFTVY AFMRLGYTDE ANAFMSWVRG RLDDCCEQTE KLGILYALDG HAELPEEHLD HLSGYGGAQP VRIGNEAYKQ VQLDIYGELM DAVYLANKYG DAISHDGWQH VVRQVDYVCE HWNDRDVGIW EMRGGDQHFL HSRLMCWVAL DRALRLAFKR SLSGPFERWT KVREEIHNDI WKNFWNDDLG HFVQHKGSRN LDASMLLMPL VRFVGANDPK WLATLDAIEA ALVRDGMVFR YRNDDDHDDG LAGEEGAFVA CSFWYVECLA RAGRVEQAHL EFEQLLRYAN PLGLYAEEFD AHAHHLGNTP QALSHLALIS AASFLDRKLG GGQALWQP
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