| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2110 |
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| Symbol | |
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| ID | 3367624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2464720 |
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| End bp | 2467110 |
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| Gene Length | 2391 bp |
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| Protein Length | 796 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637652459 |
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| Product | PAS:GGDEF |
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| Protein accession | YP_235191 |
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| Protein GI | 66045350 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.172113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0218284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGTGA AACGGTTCAA GCTCAGAGTT CTGAGTTTCA TCAATGGCCA GCTTTCAGCG
TGGCTTATCG CTGTCGTGGC ATTGCTGGTC GGTGTGGCAC TTACGATCAT GCTGGCGCTG
GCCGACAACG AGTTGTATCA GCGCCAGTTG CGTCAGCGTT TCGATACTGT TGCCGCGGAG
CGCTTCAGTC GCCTGCAGGA GCGTCTGGAC CGGCAGACTA CCCGGCTCGA CACCCTCGCT
CGCTTCTTTA TCTACTCCCA TCAGGTTGAA CTGTCCGAAT TCAACGGCTT TGTCGCGCCT
TTACTGATTG GTACCCAGGC GTATGCCTGG AACCCTAGAG TGTCGCAGGC CGAACGGACG
GCTTTTGAAA GACAGTTGCG TGAGGAAGGC TCAGCCGCGT ATGCCATAAG CGAAATGGAT
GAAAACGGCG CCTTGAAAGC CGCCGCCGTG CGAAATGAGT ATTTCCCGGT TCGATTCATC
CAGACGCTCA GTGACATTCC GACGCCAGCA GGGTTCGATA TCGCCTCGGA GCCGGTACGC
CGTGCCGCGC TGGAGCGTGC GCGGTTGCTG AAACGAACCG TCGCAACGCC TCGTATCCGC
CTGCTTTCCC TGGAGCCGTC GGACACGTAT GGCATTCTGC TGGTCGCGCC GGTGTTCTCG
ACTGGCCAGC CGGTTCCACA GTTGCGGGGC TATGTCACCG CCGTGATCAG CCTGACGCAA
TTGATGAATG TGCGCACGGC AGAGCAGGAC AATCTTGCCG TGACCATGCT CGACCTCAGT
TCGCCGGAAA AGCCCGAGCA GGTTTATCAG TCGCCGCTCC CTGCGATACA CAATCAGTTG
TATGCCAGCA GCCTGCTGAA CCTGGGTGAC AGGGATTATC TGGTCGAGGT TCGCCCTACG
CAGATTTTCA GCCTGAACAA CCAGATCATG ATGCCCGGCC GGGTGTTGTG GCTTGGAGGG
CTTTTGAGCC TGATGCTCAG CGCCTTGCTC TACAGTCTGA TCAGCCAGCG TCAGCGCGCC
TTGCAACGGG TGGCGCAGCG CACCCGCGAG CTGCGCCAGC GCGAGCACCA ATTGAGGGCC
GCGCATGGGC AGTTGCGCAG TGTGCTGGAC GCGGCGACCG AAGTGGCGAT CATCGCCACC
GATCTGGACG GGCTGATCAA GACGTTCAAC GTCGGAGCAC AGAAAATGCT CGGCTATGCG
CAAGAGGATG TGCTGGGCAG GTTCCGGCTG ATGGACTTTT ATCAGTCTGC CGATCTGGAG
GCCCGCGCGA GCCGCATGAG CAAGAGCCGC GGGCAACCCA TCAGCGCCTC GCAGCTGATG
TTTCTCGATG CTGTGCAGGA TGGTAATCAC CCTTCGCAGG AGTGGACCCT GCAGCGCAGC
GATGGCAGCA CGCTGGTGGT GAACATGCTG GTCACTGCGG TGCGTGACGA TCAGGGGCTG
TGGACCGGGT ATCTGGCGGT ATGCATCGAC GTCACCGAGC ACAAGCGCGT CAACCAGGCC
CTTGCCGAGC AGGGACAGTT GTTGAAAAAG CTCGGCTCGC AAGTGCCTGG CGGCATTTAC
CAGTACCACC TGGCCGTCGA TGGCAGCGCA TGTTTCAGGT ACGCCAGCGC CGGCATGTGC
GAGCTGTTCG AGGTGGACGA AGAGCAGTTG CTGGGCGATT CCGAAACTAT CCTGCAACGC
ATACAGCCGC TGGACCTGGC ACGGGTCAGA AGCTCCATTC TGATCAGCGC CACACACCTG
ACACCGTGGA GCCAGGAGTA CCGCGTCAAT CTGCCACGCA AGGGGCAGCG CTGGTTACGC
TCGGCCTCCA CGCCCGAGCG CCTGGCCGAT GGCAGCGTGC TGTGGCATGG CTTTGTGTCC
GATATCACCG ACCTCAAACG CGTCGAGCAG GAGTTGCGTG CGCTGTCGGT CACCGACGTG
CTGACCGGCG CCTATAATCG TCGCTACTTT CAGGACCGGA TGCAGGCCGA GCTGAAAAGA
ATCGACCGGC ACGGCGGTAA CCTGTCGATC ATCATGCTCG ATATCGATCA CTTCAAGCGG
ATCAATGACC GCTTCGGGCA TGCCGCAGGC GATCAGGTGC TCAAGGCCAT CTCGGAAAAG
ATCAGCCAGC GGCTGCGCAG CGACGATGTG TTCTGCCGTC TGGGTGGCGA AGAGTTTATG
GTGATCTGTC CGGGAACGCG GGGTGCCCAG GCCTATCAAC TGGCACTGAG CCTGCGCGAG
GAACTGCGCA ATCAGGCTAT CGAAGGCGTC GACCAAGTGG TCACAGGCAG CTTCGGGATC
GCCAGCTGGC GAGAGGGTGA GGGGATCGAC GAGATGTTGC TGCGTGCCGA CTCGGGCGTC
TACGCCGCCA AACAGGCCGG TCGCGACCGG GTCGAGCCCG AGCAGGGTTG A
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| Protein sequence | MTVKRFKLRV LSFINGQLSA WLIAVVALLV GVALTIMLAL ADNELYQRQL RQRFDTVAAE
RFSRLQERLD RQTTRLDTLA RFFIYSHQVE LSEFNGFVAP LLIGTQAYAW NPRVSQAERT
AFERQLREEG SAAYAISEMD ENGALKAAAV RNEYFPVRFI QTLSDIPTPA GFDIASEPVR
RAALERARLL KRTVATPRIR LLSLEPSDTY GILLVAPVFS TGQPVPQLRG YVTAVISLTQ
LMNVRTAEQD NLAVTMLDLS SPEKPEQVYQ SPLPAIHNQL YASSLLNLGD RDYLVEVRPT
QIFSLNNQIM MPGRVLWLGG LLSLMLSALL YSLISQRQRA LQRVAQRTRE LRQREHQLRA
AHGQLRSVLD AATEVAIIAT DLDGLIKTFN VGAQKMLGYA QEDVLGRFRL MDFYQSADLE
ARASRMSKSR GQPISASQLM FLDAVQDGNH PSQEWTLQRS DGSTLVVNML VTAVRDDQGL
WTGYLAVCID VTEHKRVNQA LAEQGQLLKK LGSQVPGGIY QYHLAVDGSA CFRYASAGMC
ELFEVDEEQL LGDSETILQR IQPLDLARVR SSILISATHL TPWSQEYRVN LPRKGQRWLR
SASTPERLAD GSVLWHGFVS DITDLKRVEQ ELRALSVTDV LTGAYNRRYF QDRMQAELKR
IDRHGGNLSI IMLDIDHFKR INDRFGHAAG DQVLKAISEK ISQRLRSDDV FCRLGGEEFM
VICPGTRGAQ AYQLALSLRE ELRNQAIEGV DQVVTGSFGI ASWREGEGID EMLLRADSGV
YAAKQAGRDR VEPEQG
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