| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_2044 |
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| Symbol | |
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| ID | 3367558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | + |
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| Start bp | 2384690 |
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| End bp | 2389426 |
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| Gene Length | 4737 bp |
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| Protein Length | 1578 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637652393 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_235125 |
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| Protein GI | 66045284 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.699385 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAT CGACTTCCGT ACACTCCAAC GCGTTCAACT TCCTGAGTTA TGTACAGAGC
GGCGTTGACC CCCGTACCGG GCAATACACG GTGGCGATCA CCCTGCCCGA TGTCAAGACC
AACGGATTGC GTGGCCCGGG TATGCCACTG GCACTTAACT ACAACCCTCT CAACCGCCAG
GACAGCGGCT TTGGTCTGGG CTGGAACCTG CAGTTGTCGC AGTACGATCC GGGTAACCAG
ATCGTGTCGC TGAGCAGCGG CGAGACATTC AAGGTCGATG GCACCAGCGA CGACCAGATG
CTGATGTCGG AAAAGAAAAT CGACAGTTTT CACTTGTACA AGGAGGACGA GACCCATTTC
AGGGTGATGC ACAAGTCCGG TCTGGTGGAG CTGCTCGAAC TGCGTGGCAG CGGGGCCAAC
AGGGTCGCAC TGCCGGTGCG CGTATTCGCC CCGGAAGGTC ACAGTGTCAC GCTGGATTAC
GCCTCTTTCG GCGGGTATCA GATGCTCAGC GAAGTAACGG ATGACTCGGG TCAGCTTCTG
CTCGGCATCA GCCGCGAAGA CACGGCGGTG ACGCTGCGCA TGACCACTGG CGAAGGCCCG
GATGCGACAT TCAAGATGGT GCTGGGCGGA TCGGATCACC GTGTCAACCG TATCGAGCTG
CCGACCGACA ATGCTGCCTC GTGGCGTTTT GTATACAGCC TGATCCGTGA GCATCTATGC
ATGACGTCGG TGGAAACACC CGTTGGCGGT CGGGAAGAGA TCTTTTATAC CGACGGCGGC
CATCAGTTTC CTGCGAGGGC GGCACGTCCC CCTCTGCCCA GAGTCACGCG CCATCGCACG
ACGCCGGGCT TGGGGCAGGC GCAAATGGAC GTTTTTTACA GTTACCAGGA CAGCGCCGGG
CGCGAGCGCA ACTTCCTGGG CGCGGGGCTG GATATCGCCT GGGAAGACAA TGGTCTGGAC
AATCTGTATC GCTATCTCGG GGCGGAGCTG TACGAATATT CGTCGACCGA GACATTGCGT
GTCCAGGTCG CGGGCAAGCC TGATGCCGAG CGCAGTATCG AACGGACCTT CAACCAGTTT
CACCTGCTCA CTCGGGAAAC CACGCGCAAG AACCTTACCG TCATGCAGGT GGACACTCGG
TACTACATCG TGCCGGGACA ACCCTTTTTT ACTCAGCCTG CCTACTGTCA ATTACCCAAG
GAGGTCCAGA CCACCTGGCG GCTGTCGTCA GACGGCAGTG TGCCGCGCAG TGAAATGGTC
AGCAGCACCT ATGACAAACA CGGCAATCTG CTCACTCAGA CTCAGGCCAA CGGTATGGTC
GAGGTCAGTG AGTGGTATCC GGCCGCCGGC GAGGATGGCT GCCCGCCAGA CCCTGAAGGC
TTCGTCCGCT GGATGAAAAG CAGCAAGATC ATCCCGGCGG CGTCCGACTA CGGTAATGCC
CCGGTCCTGA TCACCCGCTA TCGCTACACG GCGTTGCCTG CTGTGGATGG CGGTCAGCTA
CAGCAATGGC TTGCACCGCA AAGCGAGACG TTACTGATGC AGGCCCCTGA AGATGAGTAC
GAGCAGCGCC TCACGACCTA TGAATATTTC GATGAGCCGA ACAACGCACT TCTGCACGGT
CGGCTCAAAC TGCAACGGGT GATCATGGGC GAGAATGCAA CCAGCACAGA GTATGCCTAC
AGCACCCCTG ACAGCGAGAT TTATGGCAAG ACTGTGCTGC AAACCGTACA GACCGTGACC
GGCTTCGATG GCGCGAAGAA GGTCACTACC CTGGAGGATT CTCTGCTCAA CGGCGAACCC
TTGCTCAATC GCGACGACAA CAACGTGGAA ATCCGTTATG TCTACGACAG CCTGCGGCGT
GTACTGAGTG AAACGGTGGC GCCCAATGAT GATATCTACC AGGCGACCAG AAGTTATGAG
TATCAGCTCT GTGCCAAGGC CACCGATCAG GCCACGCAGA CGCTCATCGA CGTCAAGGGG
GTCAAAACCT GCAGTCACTT TGATGGCCTC AACCGAGTCA TCCATGAGGA GCGGGATGAC
GCAGATAAAC CTGCGCGCGT CGACAAACCT CGACAGACCT ACGCTGCCGT TTACGACGCA
TGGGGGCTCA TGGTCAACGA GACCGAGTTT GACTGGCTTG GTCAGCAGGA TCTGGCGCTG
AAGAGCGTCT ACGAATATGA CGATTGGGGC GAACAGCGCT GCGTCACCGG CGCGGATAAT
ATCAAGACGT TCGAAGAGAC CGACCCCATT GGTACGGCGC AATCGCAAGG CCCTGTTCAG
CGTAGCTGGA TCGAAGGCAC CGATGGCAAA GGGAAAAGCG AGTTCACCGA GACCTGGATG
AACCTGTTCG AACAGCCGAC CCGTAGCGAG CGACAGGATA AGGCCGGCAC CTCGGTCAGT
CTGAGCCAGT ACCATTACGA TGGCCTTGGC CGCCGTGTCG AGGAAATTGT CGGGGTGGTA
AACGGCGGGC GGCGCACGAC CTATGTCTAC GACGTCTTTG ATCGGGTGAT CGAGTCCACA
TTGCCAAGCG AGGCCATCGT GCGTCGCAGC TATGCAAGCC ACAGCAGCGA AGACTTGCCC
ATCAGTATCG GCATCGAGCA CAACGGCAAA AGCATTGTGT TGGGAGAGCA GTCGTTCGAC
GGGCTGGATC GTCTGGTCAG TTCTGTCACC GGCGGGCGTA AACGTACGCT TGTTTACGAC
GTCGGTCTGC TGCAACCCAG AACGGTAACC CTGCCCAGCA AGCGGAAAAT CGATTACGAA
TACAAGCCCC AGGTAGGCGA CGAGCCGTGG CGCCGGGTGC AGTCCGAAGC TGAGCCCGAA
CCTGACACCA CCCGCGAAGT TGATCCGCTG AAACAATCCG GGCCTGGTGC AGCGCCTGCC
CGGACCGCGG AGCCGGGTGT GGCTGCCGAT TACACGTACG ATAAGCAGAA TGCTCGTCTG
ATTCATTCCG AGGAGCAGGG TGAGATACTG GATCGCGAGT ATTACAGTAC CGGCTCGCTG
AAAAGCGAGA AGCGCACCTC GGCAGGCAAA ACCTACGACA TGTTCTACAG CTACAGCCGA
CAGGGCCTGC TGCTGTCTTA CACCGATGTA CTGGGACAGG AACAGGTCAA TCGCTATGAC
ACCTGCGGTC GTCTCGAGGA AACCCGGCTG GGTGAGGTTT ATTCAACGTT TGCCTATGAC
GTTGTGTTTG GTCGTCTCGC GAAAATCACC ACCACCGACC AAACCGACAG CAGCCGCGAA
AGAACCGTCG CGATCAGCCT TGAATATGAT GATCTGGGGC GAGAAGTAAA GCGTACGTTT
GACCTCGATG GTGTCGAGCA GCAGATGGTT CAGGTCTATG ACGATGTGGA TGACATGGTC
CAGCGCACCC TTAGCGAAGG CACGGAAATA CTCCGTGACG AACACTACAA CTACGATACG
TCCGGTCGCC TGACTCAATA CCAGTGCACG GGGACTCAAC GGCCGGTGGA CCCTTATGGC
AGGACCCTCC TCGGGCAGAA CTTCATTTTC GATGGCGCTA ACAACCTGAC GTTCGTCACC
ACCCGCTTCG ATGGCGGCAG CAACAATGCC AGGTATTTTT ACGAGGGTGA CGATCCCGTG
CAGTTGAGCC GGGTAACGAA CACCAACCAC GCGTACTACC CGCCTGAAAT CAACCTCCGC
TATGACCCGG ACGGCAATCT GGACATCGAC GAAGCCGGGC GCACGCTCAA ATACGATCCC
CTCGGCCGCC TGATCGAAGT AGGCACGCTC TCAGCCGGCA TTCATTACCA GTATGACCCC
CAGGACCAAC TGACCGGGGA GACCCGTGGC GGCGACAGGG ACCTGCGCTT CTATCGCGAC
GGAGAGCTGG CCAATCAACT CGGCAGCCAG GGCCAGAGCA CCTTCATGCG TGGCGACGAC
TACCTGCTGG CCGAGCAGCA GGGTGACCGG ACGCTGCTGC TTGCCACCAG CGCCAGCGAT
AGCGTGCTGG GCGAGGTGGC TGCCGACGGG GTCAACCGGA GGTGGTATAC GGCATACGGC
CACGCCAGCG GTGAAGATCC ACCGCACGGC AGACTGGGGT TCAACGGCGA ACTGAGCGAG
GCGGATACCG GCTGGCAAAT GCTGGGCAAT GGCTATCGGG CCTACAGCCC GGTGTTGATG
CGCTTCAACA GTCCTGATAG CTGGAGTCCG TTTGGTGAGG GTGGGATGAA TGCTTATGCG
TATGTTGAGG GGGATCCGGT GAATATGCGG GATCCAACGG GGCACTTTGG GTTATTTACC
CCATTCAAGC TGTTGTACCG AGCTTTAAAG ACGACTCCTA CTCTGACCAC AAAATCTCCG
GGGGTCGAAA AGATTCCCGG GCTACTTACC TCTCGTGGGC GTAAAGAGGT AACAAAGTTA
TCGAAAATCA CGATGGACGA TTGGGATGAT TTGACAGATG TGGCTGAAAG TTATCCTGCG
CGAATTAGAA GCGCTAAGAT TGATAACAAA CCTGGTCTTG CGGCTACCCT CACTACCAAA
CAAACTGAGG CTAAGGATGC ACTAAACTAT TTGTCTGCTC ATGTCAATCA GCCCGGTATT
ACTGCTCATG CGCGCCGAGC AATTAAAAAA GATTTATCAT TTGCCAAAAA AGAGCTTAAA
AAAATTCCCA CCCCAGAAAA AATAAGGAAT TCGTCTCGAA CACCTGCTCG ATCAAAACCG
TACTGGATTA ATCGCCGCCA AAAAAAAGAC CGATTTGGAT TTAATCCAGA CAACTAA
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| Protein sequence | MTASTSVHSN AFNFLSYVQS GVDPRTGQYT VAITLPDVKT NGLRGPGMPL ALNYNPLNRQ
DSGFGLGWNL QLSQYDPGNQ IVSLSSGETF KVDGTSDDQM LMSEKKIDSF HLYKEDETHF
RVMHKSGLVE LLELRGSGAN RVALPVRVFA PEGHSVTLDY ASFGGYQMLS EVTDDSGQLL
LGISREDTAV TLRMTTGEGP DATFKMVLGG SDHRVNRIEL PTDNAASWRF VYSLIREHLC
MTSVETPVGG REEIFYTDGG HQFPARAARP PLPRVTRHRT TPGLGQAQMD VFYSYQDSAG
RERNFLGAGL DIAWEDNGLD NLYRYLGAEL YEYSSTETLR VQVAGKPDAE RSIERTFNQF
HLLTRETTRK NLTVMQVDTR YYIVPGQPFF TQPAYCQLPK EVQTTWRLSS DGSVPRSEMV
SSTYDKHGNL LTQTQANGMV EVSEWYPAAG EDGCPPDPEG FVRWMKSSKI IPAASDYGNA
PVLITRYRYT ALPAVDGGQL QQWLAPQSET LLMQAPEDEY EQRLTTYEYF DEPNNALLHG
RLKLQRVIMG ENATSTEYAY STPDSEIYGK TVLQTVQTVT GFDGAKKVTT LEDSLLNGEP
LLNRDDNNVE IRYVYDSLRR VLSETVAPND DIYQATRSYE YQLCAKATDQ ATQTLIDVKG
VKTCSHFDGL NRVIHEERDD ADKPARVDKP RQTYAAVYDA WGLMVNETEF DWLGQQDLAL
KSVYEYDDWG EQRCVTGADN IKTFEETDPI GTAQSQGPVQ RSWIEGTDGK GKSEFTETWM
NLFEQPTRSE RQDKAGTSVS LSQYHYDGLG RRVEEIVGVV NGGRRTTYVY DVFDRVIEST
LPSEAIVRRS YASHSSEDLP ISIGIEHNGK SIVLGEQSFD GLDRLVSSVT GGRKRTLVYD
VGLLQPRTVT LPSKRKIDYE YKPQVGDEPW RRVQSEAEPE PDTTREVDPL KQSGPGAAPA
RTAEPGVAAD YTYDKQNARL IHSEEQGEIL DREYYSTGSL KSEKRTSAGK TYDMFYSYSR
QGLLLSYTDV LGQEQVNRYD TCGRLEETRL GEVYSTFAYD VVFGRLAKIT TTDQTDSSRE
RTVAISLEYD DLGREVKRTF DLDGVEQQMV QVYDDVDDMV QRTLSEGTEI LRDEHYNYDT
SGRLTQYQCT GTQRPVDPYG RTLLGQNFIF DGANNLTFVT TRFDGGSNNA RYFYEGDDPV
QLSRVTNTNH AYYPPEINLR YDPDGNLDID EAGRTLKYDP LGRLIEVGTL SAGIHYQYDP
QDQLTGETRG GDRDLRFYRD GELANQLGSQ GQSTFMRGDD YLLAEQQGDR TLLLATSASD
SVLGEVAADG VNRRWYTAYG HASGEDPPHG RLGFNGELSE ADTGWQMLGN GYRAYSPVLM
RFNSPDSWSP FGEGGMNAYA YVEGDPVNMR DPTGHFGLFT PFKLLYRALK TTPTLTTKSP
GVEKIPGLLT SRGRKEVTKL SKITMDDWDD LTDVAESYPA RIRSAKIDNK PGLAATLTTK
QTEAKDALNY LSAHVNQPGI TAHARRAIKK DLSFAKKELK KIPTPEKIRN SSRTPARSKP
YWINRRQKKD RFGFNPDN
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