Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1791 |
Symbol | |
ID | 3367299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | + |
Start bp | 2043861 |
End bp | 2044583 |
Gene Length | 723 bp |
Protein Length | 240 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637652139 |
Product | HAD family hydrolase |
Protein accession | YP_234876 |
Protein GI | 66045035 |
COG category | [R] General function prediction only |
COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0351964 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAGGC TGGAACAGAT AGGGTTTCTC GGTTTCGATG TATTCGGCAC CGTTGTCGAC TGGCGAAACG GCGTGGCGCG GGCCGCTGCG CCATTTCTGC AGCGGCATGG CGTGGACGTC GATCCCCTTG ATTTTGCCGA TCAGTGGCGG GGTCTTTATC AGCCTTCCAT GCAGCGCGTG CGTGCGGGTG AGCGCCCGTA CGTGACACTC GACGTGCTCA ACCGGGAGAG TCTCGAAACA GTGCTGGCGC GCCATGAGGT GGATTTCGGC AGCATCCCCG ACGCCGAGCT CGTCGAGCTC AACAAGGCCT GGGAGCGGCT CGATCCATGG CCTGACTCGG TCGCAGGCCT GAGCCGATTA AAGCGCAGGT TCTCGATCGG TACGCTATCG AACGGACACA TCGCCGGAAT GCTCAACCTG GCGAAATTCG GCGGATTGCC CTGGGACGTT ATCGTCGGTG CGGAGATCGC CGGGACCTAT AAACCGATGC CCCAGACCTA CCTGAAGTCT GCAAAAGCAG TAGGCCTGGA ACCGCATTGC GTCGCCATGG TGGCTGCGCA TAACGCCGAC CTGACTGCCG CTCGTGCGAA TGGCTTCAAG ACCGTTTTCG TCCGACGTCC CGCCGAGCAC GGGCCAGGCC AGACGTCTGA CCTGAGCGCC GAACAGGACT GGGACGTGAT CGTCGATTCC CTGACCGAAG CGGCTGACGC GCTCGATTGC TGA
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Protein sequence | MARLEQIGFL GFDVFGTVVD WRNGVARAAA PFLQRHGVDV DPLDFADQWR GLYQPSMQRV RAGERPYVTL DVLNRESLET VLARHEVDFG SIPDAELVEL NKAWERLDPW PDSVAGLSRL KRRFSIGTLS NGHIAGMLNL AKFGGLPWDV IVGAEIAGTY KPMPQTYLKS AKAVGLEPHC VAMVAAHNAD LTAARANGFK TVFVRRPAEH GPGQTSDLSA EQDWDVIVDS LTEAADALDC
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