| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_1205 |
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| Symbol | HrcU |
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| ID | 3366699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. syringae B728a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007005 |
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| Strand | - |
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| Start bp | 1364133 |
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| End bp | 1365212 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637651546 |
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| Product | type III secretion protein HrcU |
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| Protein accession | YP_234297 |
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| Protein GI | 66044456 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.322672 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.485565 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGAAA AAACCGAAAA GGCCACGCCC AAGCAACTGC GTGACGCGCG GGAAAAGGGT
CAGGTCGGGC AGAGTCAGGA CCTCGGCAAA CTGCTGGTGT TGATGGCCGT CAGTGAAATT
ACCCTGGCCC TGGCTGATGA AAGCGTCAAC CGACTGGAGG CGCTGTTGTC GCTGTCCTTT
CAAGGCATCG ACCGCAGCTT TGCCGCGTCG GTCGAGCTGA TCGCCAGCGA AGGACTCTCG
GTACTGCTCA GCTTTACCTT GTGCAGCGTC GGTATAGCGA TGCTGATGCG TCTGATCAGC
AGCTGGATGC AGATCGGTTT TCTGTTCGCG CCCAAGGCGC TGAAAATCGA TCCCAACAAG
ATCAACCCGT TCTCCCACGC CAAACAGATG TTTTCCGGGC AAAACCTGCT CAACCTGCTG
CTCAGTGTGC TCAAGGCCAT TGCCATCGGC GCGACGCTGT ATGTGCAAGT CAAACCTGTG
CTGGGCACCC TGGTGTTGCT GGCCAACAGC GATCTGACGA CCTACTGGCA TGCCCTGGTC
GAGCTGTTCA GGCATATTTT GCGAGTGATA TTGGGGCTGC TGCTGGCGAT CGCGATGATC
GACTTCGCCA TGCAGAAATA CTTCCATGCG AAAAAACTGC GCATGAGCCA CGAGGACATC
AAGAAAGAGT ACAAGCAATC GGAAGGCGAC CCCCACGTCA AAGGCCATCG TCGGCAACTT
GCCCAGGAGA TCCTCAATCA GGAGCCCAGT GCTGCGCCCA AGCCTGTGGA AGACGCCGAC
ATGCTGCTGG TCAACCCGAC GCACTACGCG GTGGCCCTGT ATTACCGACC AGGCGAAACG
CCTCTGCCGC TGATTCATTG CAAAGGTGAA GACGAGGAAG CCCTGGCATT GATTGCCCGC
GCCAAAAAAG CCGGCATCCC GGTGGTGCAG AGCATCTGGC TGACCAGGAC GCTGTACCGC
TCCAAGGTCG GAAAATATAT CCCCCGGCCC ACCCTGCAGG CTGTCGGTCA CATCTACAAA
GTGGTTCGGC AACTGGACGA AGTCACCGAT GAGGTGATTC AGGTTGAAGT CGAGCTGTGA
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| Protein sequence | MSEKTEKATP KQLRDAREKG QVGQSQDLGK LLVLMAVSEI TLALADESVN RLEALLSLSF
QGIDRSFAAS VELIASEGLS VLLSFTLCSV GIAMLMRLIS SWMQIGFLFA PKALKIDPNK
INPFSHAKQM FSGQNLLNLL LSVLKAIAIG ATLYVQVKPV LGTLVLLANS DLTTYWHALV
ELFRHILRVI LGLLLAIAMI DFAMQKYFHA KKLRMSHEDI KKEYKQSEGD PHVKGHRRQL
AQEILNQEPS AAPKPVEDAD MLLVNPTHYA VALYYRPGET PLPLIHCKGE DEEALALIAR
AKKAGIPVVQ SIWLTRTLYR SKVGKYIPRP TLQAVGHIYK VVRQLDEVTD EVIQVEVEL
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