Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Psyr_1029 |
Symbol | |
ID | 3366523 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. syringae B728a |
Kingdom | Bacteria |
Replicon accession | NC_007005 |
Strand | - |
Start bp | 1159307 |
End bp | 1161271 |
Gene Length | 1965 bp |
Protein Length | 654 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637651372 |
Product | peptidase aspartic, active site |
Protein accession | YP_234123 |
Protein GI | 66044282 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCGCC CCTTCATCCT GTCGCTGCTG GTGACCGGCC TGAGTCTTTC TTCGCCGTTC AGCCAGGCAG AAACCCTGCC TTTGCCGTTG ACCGGCCCGG CGTATGCCAT CGCCAACGAA GCCTACATGG CCTACAACCG CAAGGATTAC GACCTGGCCA TTGCCAAAGC GAACGAAGCG TTGCGTCAGC GCGGTGACGC TCAGCAGTTG CGTGACCTCA TTACGTTGGC CGAACGCGAC AAGTACCGCC GCGATCACCC GCAACGCGCT TACAAGACGC GTCCGCAACC TGGCTATCTG GAAGGCAATC GGGCGCTGCG CGCCTACGCC AACCGCGACT ACGACGGCTC GGCCAGTCAT GCGCGCAAGG CCATTGCCCA GGCACCGAAG AACCTCGATT ACCGCATGAT GCTGATCGAG GCACTGCAAC GTCAGCAGCG TCTTGATCAA GCACAGGCAG CGATCAACGA TGCCGAGCAG GCACTGGGGC CGCAACAGGT GCTGACGCGT CGTCGGCAGG CGATTCAGGA GCAGGTGGCG GTCGACAAGG CGGCCACCGG CTACAAGGCA CTGGCTCGCG GAGATAACGA CACCGCAGTC AGCGAGGCGC GGGAGGCTGT CCGCAGTTTC CCAAAGCAGA TGGCCTACCG GAAATTACTG GTCAGCGCCC TGATTGCCCA AGGGCAGTAT GCCGAAGCGC GCTCTGCGGC CACCGAAGCG CTGGCGCTGA ATGGCAACGA CGCCACCCTG CTCGTCCAGC GCGGACAAAT GCGTCAACGC CTGGGCGATC AGGACGGTGC GCGTCAGGAC TTCGCCCAGG CCATGGCGGT CGGCAACCTG CCGCTGCGTG AACAGGCCTC GTTGTACGCC GCCATGGGCC AGCCGAGTGA GGCATTGCAA CGCTTGCAGA AAGCACGCGA CGCGGGCGAA CTGCAACCCG GCGATGAAGT GCAGATAGCC TATTTCCTCA GCCAGGCGGG CGATGATCAA GGTGCGCTGG ATACGTTCAA GCGTGTTGAC CGTCAGTCCG GCCTCAAGCC ACGCGAAGTG CAGGATGCCG CCTACAGCGC GATGCGCACG TCGAACGATG CGCAGGCCAT CGCCTACTTC AAGCGCGTGC TCGATTACCA GCAGACCGGC GATCTGCAGA TGCCCGCGCA ACAGGTGTTC GATACGCGAC GTGCCGTTTC TGATCTGTCC CGTGAATGGG GCCTGACCAA CACCACGACT TATCGGGGCG CCAGCACCAG CAGCGGCCTG AGCGGCGCAC CCGGCGGCAG CAATGACAGC GTGCAGAACA GCACCGAAGT GTTCTGGCGA CCCTTCGGTT ACCGCAATGC GCGCTTCGTC GAGCTTTACG GACGCGTCAC CGACACGCTG TGGAGCAAGG AAGGCGACTC CGACACAGGC GCGGACGCTT TGCAGGGCGC GCTCGGTATC CGGGTCAAGC CGTTCAGCGC AGTCAACGTG ATCGGTGCCT TCGAACGCAC CTTTCCGCTA GGCAACTCGA ACGCCGACGG CGACTGGCTG GTGCGCCTGG GCTACGGCTC GAGCATCGGC ACCGACCTGC GCGTCGATGT ACCGAGCTGG TGGACGTCGC AGCTGTACGC TGAAGGCGGG CGCTATCTGC AGGACAAGCG CAACTATTTC AACAGCGAGT GGCAGGTCGG ACGCAGCTTC CGTCTGGACA GCATCAGCCC GCGGCTGGTG GTGTTTCCCC ATGTGGTCGC CGCAGTGGAC TACGATTCGA AGATGCGCAG TGAGGTCGAC AGTCTCGGCC GTAGCAGCAC ATCATCGGGT AATGCTGGCG GGCTTGGTGT CGGTACGGGC GTGCGTTACT GGTTCCGCGA GGATAAGTAC AAGGCGCCGC AGTCGTATGT CGACTTCTCC GTGCAGTATC GCGAGAAAGT GTTTGGCGAT GACCGCGCAG AAGGCGTTTT CGCACGCATG ACGTTCTCGT GGTGA
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Protein sequence | MKRPFILSLL VTGLSLSSPF SQAETLPLPL TGPAYAIANE AYMAYNRKDY DLAIAKANEA LRQRGDAQQL RDLITLAERD KYRRDHPQRA YKTRPQPGYL EGNRALRAYA NRDYDGSASH ARKAIAQAPK NLDYRMMLIE ALQRQQRLDQ AQAAINDAEQ ALGPQQVLTR RRQAIQEQVA VDKAATGYKA LARGDNDTAV SEAREAVRSF PKQMAYRKLL VSALIAQGQY AEARSAATEA LALNGNDATL LVQRGQMRQR LGDQDGARQD FAQAMAVGNL PLREQASLYA AMGQPSEALQ RLQKARDAGE LQPGDEVQIA YFLSQAGDDQ GALDTFKRVD RQSGLKPREV QDAAYSAMRT SNDAQAIAYF KRVLDYQQTG DLQMPAQQVF DTRRAVSDLS REWGLTNTTT YRGASTSSGL SGAPGGSNDS VQNSTEVFWR PFGYRNARFV ELYGRVTDTL WSKEGDSDTG ADALQGALGI RVKPFSAVNV IGAFERTFPL GNSNADGDWL VRLGYGSSIG TDLRVDVPSW WTSQLYAEGG RYLQDKRNYF NSEWQVGRSF RLDSISPRLV VFPHVVAAVD YDSKMRSEVD SLGRSSTSSG NAGGLGVGTG VRYWFREDKY KAPQSYVDFS VQYREKVFGD DRAEGVFARM TFSW
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