Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1817 |
Symbol | |
ID | 5206307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 2254617 |
End bp | 2257172 |
Gene Length | 2556 bp |
Protein Length | 851 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640600046 |
Product | fimbrial biogenesis outer membrane usher protein |
Protein accession | YP_001280707 |
Protein GI | 148653614 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00513641 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATAAGG CAAAAATAAT CAAAAATTCT GTAAAGCGTA CGTTTAGCTA CTCGCTATTG TGTGGCGTGG TAACCTTAAG TATTTCAGGT TTGGCATTGG CCGATGAGAC TGCCGGAAAT GAGAATGCTG GGGCGATTTC TGCAGATTTT GATTCAGCAT TTTTGATTGG CGATGCCAAG AAAATTGATA TTTCCAAGTT TGCTAATGGT AATCCTATTT TGCCAGGTGA ATATAGCTTA GATGTTTATG TTAATGGTAA TTGGTTTGGC AAACAGCGCT TGGTATTTAA ACCTACCCCA GATGACAAAA GCTCATTCAC TTGCTTTACG CCCAAACAGC TACTTGAATT CGGTATCAAA GCGGAACTGA TTAAACAAAA GGCCAAAAAC TCTGCCAACA GTTGTTTGCC ACTTGAGCAG TGGGTAGATG AGGCCTTTTA TAACTTTGAT ATGTCAAGTC TAAAGCTTGA GGTATCTATT CCTCAAGTTG CTATGCAGAA TAATGCCCGA GGTTACGTTG ATCCTAGCAT CTGGGATAGG GGTATTAATG CTGGCTTTGC CTCTTATAAC GCCAGTGCCT ACAAGACCTT TGATAGTACT AACAATCAAG AAAACACCAA TGCCTTTGTC TCGCTCAATG CTGGACTTAA CCTAGCCAGC TGGCAGCTGC GTCATAATGG CCAGTGGACG TGGTCAGACA ATGAGGATGG TAAGTCAGAA TACACTGCGG TAAACACCTA TTTACAGCGT GCTTTTCCTG AGCAACGTGG AATACTTACT TTAGGTGATA GCTTTAGTCA AGGTGATATA TTTGATACTT TCGGTTATCG CGGCGTAGCT TTTGCCAGTG ATGATCGTAT GTTGCCCAGT AGCTTAAGTG GTTATGCCCC ACGCATTCGC GGTAATGCGA AGACCAATGC TAAGGTAGAG GTTCGCCAGC AAGGCCAGCT CATTTATCAA ACCAACGTAT CTGCCGGTAG CTTTGAGATT AACGATTTAT ATCCCACAGG CTTTGGTGGA CAGCTAGACG TGTCTGTTAT TGAAGCCGAT GGCGAAGTAC AGAAATTCTC TCTTCCTTAC ACCTCAGTGG CTCAAATGCT ACGTCCTGGG CTAAGCCGCT ATGCGGTGGT AGCGGGCAAT TATCGCAATA AAGAGATTGA TAAAGATCCT TTGATTTTAC AAGGTCAATA CCAGCGCGGT ATTAATAACT TTATTACTGC CTATGGCGGT GCACAGGCCT CTGAAGACTA TAAAGCTGTG ACTTTGGGTA GCGCTTTTGC GACGCGATTG GGTGCGGTAG CTTTTGATGT CACCCACTCA GATACGGACT TTAAAAACCG GGCCCCAGAG ACTGGACAAA GTTATCGTGT CAGTTATAGC AAACTTATTA GCCCGACCAA TACCAATGTG ACTTTAGCTG CTTATCGTTA TTCAACACAA GGCTTTTACC GTTTGGCAGA TGCTTTTAAA GCACAAGAAC AGGATGAAGA GGGTATTGGT ACCTTATATA TTGGTAAACA GCGTAGTGAG TTTCAGGTGA CCTTGAACCA AGGATTACCT AATAAGTGGG GTAACTTCTA TTTAACTGGG GCTTGGGTGG ATTATTGGGA CAAACAAGAA GATACTAAAC AGTATCAGTT CGGTTATAAC AACACGTACA AAGGTGTCAG CTATGGCTTA TCTGCCAATA AACGTGTGGT AGAAAATGCC ACATCAGGCA AAGTTATCGA CGATACTGAA TATATGTTGA CCTTGTCACT GCCACTATCG ATTAAACGCA AAGCAGTCAC TCTTAACTCA TACGCTACTC AAGACAATAT CACGGTGGGT ATCAATGGCT CGCTTGGGGA TAGAACAAGC TATGGCGCTA CGTTATCTAC TGACTATGGC GAAAACCCAA GCTTAAATAC CAATGCTCAG TATCGCAGTA ACTATGCTAC TTTAGGCGGC ACTTACTCTG TAGCCGATGG CTATCAACAA CTGGGTCTGT CTGCTGGAGG TAACATAGTA GTACACCCAG AGGGTGTGGT ATTTAGTCCT GATCAGGGAA GAACCATGGT ATTGGTTTAT GCACCAGGTG CTGAAGGTGC TAAAGTGAAT AATACCGATG AGCTTACCAT TAATAAATCT GGCTACGCAG TTATCCCTTA CGTTACTCCT TACCGAATTA ATGATGTATC ATTAGATACC GTAGGCATGT CCGATGATGT AGAGCTTGAG GGTGCAAGTC AACGAATCGC TCCGTATGAA GGCTCGGTAA CTAAGGTAGA TTTTTTAACC AAATTAGGTA AAGCCATATA CATCAATACG GTTGATGACA AAGGCAATAC ACTGCCTTTT GGTGCAGATG TTGTTGACTC AAACGATGAA CATATTGGTA TAGTTGCTCA AGGAAGCTTG GTATACTTAC GGACACCAAA GTTATCTGAT ACCATCACCG TTAAATGGGG TGATGAACAA AATGAGCAGT GTCAAATGTC GTATGATATA ACCAATTTAG CCAAAGATAA AACTCAACCA ATGATTACCC TAGAAGGGGT ATGTCATGGA TTGTAA
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Protein sequence | MDKAKIIKNS VKRTFSYSLL CGVVTLSISG LALADETAGN ENAGAISADF DSAFLIGDAK KIDISKFANG NPILPGEYSL DVYVNGNWFG KQRLVFKPTP DDKSSFTCFT PKQLLEFGIK AELIKQKAKN SANSCLPLEQ WVDEAFYNFD MSSLKLEVSI PQVAMQNNAR GYVDPSIWDR GINAGFASYN ASAYKTFDST NNQENTNAFV SLNAGLNLAS WQLRHNGQWT WSDNEDGKSE YTAVNTYLQR AFPEQRGILT LGDSFSQGDI FDTFGYRGVA FASDDRMLPS SLSGYAPRIR GNAKTNAKVE VRQQGQLIYQ TNVSAGSFEI NDLYPTGFGG QLDVSVIEAD GEVQKFSLPY TSVAQMLRPG LSRYAVVAGN YRNKEIDKDP LILQGQYQRG INNFITAYGG AQASEDYKAV TLGSAFATRL GAVAFDVTHS DTDFKNRAPE TGQSYRVSYS KLISPTNTNV TLAAYRYSTQ GFYRLADAFK AQEQDEEGIG TLYIGKQRSE FQVTLNQGLP NKWGNFYLTG AWVDYWDKQE DTKQYQFGYN NTYKGVSYGL SANKRVVENA TSGKVIDDTE YMLTLSLPLS IKRKAVTLNS YATQDNITVG INGSLGDRTS YGATLSTDYG ENPSLNTNAQ YRSNYATLGG TYSVADGYQQ LGLSAGGNIV VHPEGVVFSP DQGRTMVLVY APGAEGAKVN NTDELTINKS GYAVIPYVTP YRINDVSLDT VGMSDDVELE GASQRIAPYE GSVTKVDFLT KLGKAIYINT VDDKGNTLPF GADVVDSNDE HIGIVAQGSL VYLRTPKLSD TITVKWGDEQ NEQCQMSYDI TNLAKDKTQP MITLEGVCHG L
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