| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1557 |
|---|
| Symbol | |
|---|
| ID | 5205386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1909291 |
|---|
| End bp | 1909857 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640599775 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001280448 |
|---|
| Protein GI | 148653355 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000000371893 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000555084 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAA TTAATACCTC AAGTACAGCA GTAAGCGCTC CGCTTAAACA TGAATTGTAT
ATGTCGGTGC TAATGACCCC CGATATGGCA AACTTTATTG GTAATGTACA TGGTGGCGAT
TTGCTAAAAA TGCTCGATCA GGTGGCTTAT GCCTGCGCCA GTCGCTATAG TGGTAGTTAT
GTGGTGACCT TATCGGTGGA TCAGGTGATG TTCTTAGAGC CAATTTATGT GGGTGAGCTG
GTCACTTTTG CTGCCAATAT TAATCATGTG GGCAGAACCT CGATGGAGGT TGGAATACGT
GTAGAGGCTG AAAACATCCA GCAGCGGACA GTACGCCACA CCAACAGTTG TTATTTTACG
ATGGTGGCAG TGGATGAAAA TGGTAAACCC ACGCCTGTGC CGCCTTTAGA TATTAAGAAC
CATTTGCAGC AGTGCCGCTT TGATGCTGCG ATTGAGCGCA AAAAAATGCG TCTAGAGCAG
GCCAATCGTC CTGGCTGCGG CGTAGAGTCT GCGGGCAATT TATCGGGGGC AGCTAAACCC
AGTGATCAAT ACAATGAGCC AAAATAA
|
|---|
| Protein sequence | MSQINTSSTA VSAPLKHELY MSVLMTPDMA NFIGNVHGGD LLKMLDQVAY ACASRYSGSY
VVTLSVDQVM FLEPIYVGEL VTFAANINHV GRTSMEVGIR VEAENIQQRT VRHTNSCYFT
MVAVDENGKP TPVPPLDIKN HLQQCRFDAA IERKKMRLEQ ANRPGCGVES AGNLSGAAKP
SDQYNEPK
|
|---|
| |