| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1524 |
|---|
| Symbol | |
|---|
| ID | 5206354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1861839 |
|---|
| End bp | 1864382 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640599742 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_001280415 |
|---|
| Protein GI | 148653322 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGATA ACCAGTGTGA CCGATTAATC ATTAATACAA AGACAGCCAA TAATGCTGTC
TTGTCTGCAG CAAAAAAAAC TTCTGCAGTT GTTAGTACTC GGAAAAACAG TTTATCTAAA
TTATTACTTA TGGCTTCTGC TGTACCTCTG TCCTCTATGG CTCTGGCAGC AGAGCAATCG
AGTACTCAAG CAGACTCACA AACAGAATTG ATGAGTGCAG TTAGTCCTAA TAAGCCTAAT
TCAGAGCCGC ATATCACTTT AGATGCCATC ACCGTTAAAG CCCCGCATCC TGCTGAATTC
AAAACCGATA AGTTACAAAA CCAAAAGTAC ACTCGGCCGT TAGTCGAGGT ACCACAAACG
GTAACTGTAC TGGGTGATCG TTTAATTGAA GAACAAAAAG CAGGCAGTTT AATCGATGCG
CTGCGTAATA CTCCAGGTAT TACGATGCAA ATGGGCGAAA ATGCCAATAG TACTGAGGGT
GATGCGATTA GTATGCGCGG CTTTTCAGGT AACAGCTTGT TTTTGGTAGA TGGCGTGCGT
CAAGTAGGCG CGGTTAATCG CGATACATTT AATGTTGAGT CTATCGAGGT GACCAAGGGG
CTGGCAGGTG CTGAAATTGG CCGTGGTGCA ACCGGCGGGG CCATTAATAT CATAACGAAA
AAGCCTAAGT CTTATGAGGA TTATAAAACA GAAGTCAGCA TAGATACCGA AGGTAAAACA
CGGGCTGTGG CTGATCTAAA CCGCCCCTTA AATGATGATT TTAACGGTCG ATTAAACCTG
ATGTTTGAAA AGGGTGATGC GGTAAAACGT GATGAAGTGG ATGTTAAGCA GTATGGTATT
GCACCGAGTA TTACTTGGAA TAATGGCGGA GCAACCCGAG TCACTGCTAG CGCTGAGATG
TTAAGATCTC GTAATACGCC AGAGACAGGT ATTCCATCCA TAGGAATGGA CGGTTACTTT
TATGGTCGTA CTGATTATAC GGTGGATGAC TTTGATTTTT CTGAATTTGA TTATTCACGG
GTAAATGCCT CAACGCCTGA AGAGGTCGTG GCTGAGCTGA ATGCGGCTAA TGCTGCAAGA
AATGCAGCAC CCAAAGTCAA TGACAAAAAC TACTACGGAA TGAGCAGTGA TTTTGAAGAT
ATCGACAGTG ATGTCTATAG CGTGTTTGTT GAGCATGACT TTGATGATGA CATTCATCTT
ACCAACACCA CGCGATACTC TAAGACGACC ATGGATCGTC GCTCGTCAGC ACCCTATATT
CCCTTTAATA CGCCGATTAA TATCCGTCGC GGCACCAATA AACTTGAAGT CTATGACAAG
CTGGTTGATT TAAATGTTGA TAAAAATGAT CCCAGCACTT GGCGAATTAG TGCGATTAGA
CAAGGGGTAG ATAGAGAAAA CACCACTTTA GCGAACATGA CTAATATTAA TATTTTAGAC
TTTAAAACAG GGGCATTAAG TCATGACATC AGTACTGGGG TGGAGTTTAT TAAAGAAGAA
CAAAAAAATA ATGGATTAAC GTATTCTTCA TTGGCTAATA ACTTCCCAAG TCTATATCAA
CCAAATCCAA GTGAGCCACA GGAGCCGACT GTTTCAAATG GTGTTAAAAC CAATGGTGAA
ACCAAAACAG TAGCGGCTTA TTTATTTGAT ACTATCGCTT TAAATGAGCA GTGGGATGTG
ATGCTTGGTG GTCGTGTGGA TAAATACAAA ACAGACTTTG TTACCCGTAG ACCCGATGGC
AATTCTAGTA AGCTAAAAGA TGACGGTACT TTATACAGTT ATAAAAGTGC GCTGGTATTT
AAACCCACCA AGCAGTCTAG TATTTATGCC AGCTATGGTC GAACCGAAAC CCCACCGGGC
AGTGAAAACT TCACCTTTGG TACCACTGGT CGCGATGCGG CTAACCCCAA TGCCAACCCA
ATTTTTGACC CTCAAAAAAC CAAAAGCTGG GAGATTGGCT CAAAATGGAA TGTGCTTAAT
GAGCGATTAT TGCTTGGTTT AGCCTATTAC CATACCACTC ATGAAGATGA GCTGGCAGAG
CTTGATGAAA ACCGAAACTA TGTACAGTTT GGTGAACGCC AGATTAAAGG GCTTGAGTTT
TCAGCGCAGG GTGAGATCAC GCCAGATTGG CGGGTAAACT TAGGTATCCA GACTATGGAT
ACAGATATCA AAAAAGGCAG TGTTAGCGGA CCAGGTGTAG TGGGTGCGTC TAGCAGATGG
TCACCTGAGC TAACGGGTAC CTTGTGGACC AGCTATGATT ATAATGACAA ACTCACCTTA
GGCGGCGGTG TGCGTTATGT GGATGAGCAA AAACGTGAAG CAGATCCTAA TGTCGATTTA
AGTCAGGTTT CAATGCCGGT TATTCCAGAT TACTGGGCTG TTGACTTGTT TGCTTCGTAT
CGCTTTAATG ACGCCTTCTC TGCTGACTTA AACATCAACA ATGTGTTTGA TAAAGACTAT
TTAGAGTCAG TCAACATCAT GGGCTTGAGA GCGAATAAAG GTGAGCCATT AAATGCGATG
TTAACGCTGA AGTATCAGTT TTAA
|
|---|
| Protein sequence | MHDNQCDRLI INTKTANNAV LSAAKKTSAV VSTRKNSLSK LLLMASAVPL SSMALAAEQS
STQADSQTEL MSAVSPNKPN SEPHITLDAI TVKAPHPAEF KTDKLQNQKY TRPLVEVPQT
VTVLGDRLIE EQKAGSLIDA LRNTPGITMQ MGENANSTEG DAISMRGFSG NSLFLVDGVR
QVGAVNRDTF NVESIEVTKG LAGAEIGRGA TGGAINIITK KPKSYEDYKT EVSIDTEGKT
RAVADLNRPL NDDFNGRLNL MFEKGDAVKR DEVDVKQYGI APSITWNNGG ATRVTASAEM
LRSRNTPETG IPSIGMDGYF YGRTDYTVDD FDFSEFDYSR VNASTPEEVV AELNAANAAR
NAAPKVNDKN YYGMSSDFED IDSDVYSVFV EHDFDDDIHL TNTTRYSKTT MDRRSSAPYI
PFNTPINIRR GTNKLEVYDK LVDLNVDKND PSTWRISAIR QGVDRENTTL ANMTNINILD
FKTGALSHDI STGVEFIKEE QKNNGLTYSS LANNFPSLYQ PNPSEPQEPT VSNGVKTNGE
TKTVAAYLFD TIALNEQWDV MLGGRVDKYK TDFVTRRPDG NSSKLKDDGT LYSYKSALVF
KPTKQSSIYA SYGRTETPPG SENFTFGTTG RDAANPNANP IFDPQKTKSW EIGSKWNVLN
ERLLLGLAYY HTTHEDELAE LDENRNYVQF GERQIKGLEF SAQGEITPDW RVNLGIQTMD
TDIKKGSVSG PGVVGASSRW SPELTGTLWT SYDYNDKLTL GGGVRYVDEQ KREADPNVDL
SQVSMPVIPD YWAVDLFASY RFNDAFSADL NINNVFDKDY LESVNIMGLR ANKGEPLNAM
LTLKYQF
|
|---|
| |