Gene PsycPRwf_1475 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1475 
Symbol 
ID5206619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1806393 
End bp1807070 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content35% 
IMG OID640599694 
Producthypothetical protein 
Protein accessionYP_001280369 
Protein GI148653276 
COG category[S] Function unknown 
COG ID[COG4886] Leucine-rich repeat (LRR) protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.661845 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.169207 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATT CCATCGATAA AACAACTCCC TTTGCAAATA CTGCAAACTC CCCTACTACT 
TCTCCTTCTA ATACACAAGT AGAAGCTTCT AATACACAAG TAGAAGACTG GATGTTAGAG
ATTTGGGACT GGATAGATAA CCATAGTATC CATGGCAGTG AAGACAGTAT TGTCCCTCAA
GACCCACAAT CATTACGTCA ACTTGAAAGA TTAGATTTAG GATTTGGTAG ATCAATAACC
CATGATGTCA TAGACGGTAA ATCAGTTTTG CGTGTCTTAA AGGAATCTAA AAAACCTTTA
CCCGCTGCTA TAGGTAATTT AAAAAACTTA AAGTATCTTA GACTAATTGG TTTTAGTGAA
TTGCCAGATG AGATTGCTCA ATTAGATAAT TTGGAAGAGT TAGTTTTTCT TAAATGCGAT
TTCGTTGAGT TCCCAAAAGT ATTATGTGAA CTTAGAAACC TTAAGTCACT TAATATTTAT
TCAAAAACTT TACAAAAATT ACCTGACGAG ATTGGCAACC TCACTTCGCT AACAAATATA
AATATTACTG GCACCAGTAT CAAACACCTT CCTGATTCTA TTGCCAATCT AACCAATCTA
GAGACTATGA AAACATATGC TGACCTCTGC TGTCAACAAC GGAGAAAAAC ATTTGGTAGA
TTTCATCAGG CAGCCTGA
 
Protein sequence
MNNSIDKTTP FANTANSPTT SPSNTQVEAS NTQVEDWMLE IWDWIDNHSI HGSEDSIVPQ 
DPQSLRQLER LDLGFGRSIT HDVIDGKSVL RVLKESKKPL PAAIGNLKNL KYLRLIGFSE
LPDEIAQLDN LEELVFLKCD FVEFPKVLCE LRNLKSLNIY SKTLQKLPDE IGNLTSLTNI
NITGTSIKHL PDSIANLTNL ETMKTYADLC CQQRRKTFGR FHQAA