| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0303 |
|---|
| Symbol | |
|---|
| ID | 5205254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 360701 |
|---|
| End bp | 361909 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640598513 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001279208 |
|---|
| Protein GI | 148652115 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.421003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACTG ACTCTTCCAC CCCCTTTAAC TCTCTTCAAG CACCTTCTTT TGTACTAAAA
ATGACCGCCA TGCTTATTGG CGTCTTTGCG TTTTTGCAGG TGTACTCTAT TCAGTCAATT
TTGCCGGTGC TGATGCTTGA TTTTAAGGCC AGCGAAGTGC AAGTCGGTAT GGCGGTAGGC
GCCACAGTGA TGGCCGTGGC AATCATGTCG CCCTTTTTGG GCATGCTCTC TGACGCGGTG
GGACGCAAAT CTATTATTGT CGGTGCGTTG TTATTTTTGG CGGTACCAAC AGCGCTGATT
GCGCACAGTC AGAGTATAGA GAGTCTGACC ATTTGGCGCT TTTTGCAAGG ATTATCGGTG
CCGGGCATTA CAGTGGTGAC CATCGCCTAT TTGGGCGAGG AATTTAAAGG TCATGCGGTT
GCAGAATTAA TGTCTTATTA TGTCTCAGGA TCGGTACTGG GCGGATTTTT AGGGCGTTTT
ATTTTGGGCC ATCTGCATGA GTGGGTTGGC TGGCGTATTG CTTATTATTT TATGGCTGTA
TTAACTGTGG CCGGCGCGCT TTGGGTGGCT AAGACCTTAC CTGCCTCACA GCATTTCGTT
GCCAGCCCTA AGTTTCGCAC CTCGCTGACC ACTTTGGGCA ATCACTTGAC CAACCGCTAT
GTGGTCTCCG CCTCACTGCT TGGGTTTTGT GTGTTATTCT CACTGGTAGG CTGTTTTACC
TTTATTAATC TGCATTTGGC ACAGCAGCCC TACCATTTAA CTACCGGACA GCTGGCCAAC
ATCTTTGCGG TGTATTTAAT TGGTGTCATC ATTACCCCTT TATCTACCAA GCTGTTGCAG
CGCTTTGGCT CAGTGCGCAC CATCATTACC GCGGTATTGA TGTCTATGCT GGGCGTGCTC
ATTACGCTTA GCGGACCGCT GTGGCTGATT TTAATTGGTA TTAGCATTAT GTCATCGGGG
GTGTTCATTA CCCAGTCAGC GACCATAGGC TATATCGCCA CCAATGTGCA CCATGGCCGT
TCATTGGCCT CAGGTATCTA CTATATGGGC TATTACGCTG GCGGCACCGC AGGGGCCTGG
TTATGTGGTC TGGCTTATGC TTATGGCCAA TGGCACTTTA CGGTCTGGGT GTTATTGACG
GTACAAGTAA TCGCCTTATT AATTGCCTCT ATTGGCATGG TAAAAACCTC AAATAACCCG
GCAGATTAA
|
|---|
| Protein sequence | MQTDSSTPFN SLQAPSFVLK MTAMLIGVFA FLQVYSIQSI LPVLMLDFKA SEVQVGMAVG
ATVMAVAIMS PFLGMLSDAV GRKSIIVGAL LFLAVPTALI AHSQSIESLT IWRFLQGLSV
PGITVVTIAY LGEEFKGHAV AELMSYYVSG SVLGGFLGRF ILGHLHEWVG WRIAYYFMAV
LTVAGALWVA KTLPASQHFV ASPKFRTSLT TLGNHLTNRY VVSASLLGFC VLFSLVGCFT
FINLHLAQQP YHLTTGQLAN IFAVYLIGVI ITPLSTKLLQ RFGSVRTIIT AVLMSMLGVL
ITLSGPLWLI LIGISIMSSG VFITQSATIG YIATNVHHGR SLASGIYYMG YYAGGTAGAW
LCGLAYAYGQ WHFTVWVLLT VQVIALLIAS IGMVKTSNNP AD
|
|---|
| |