Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4898 |
Symbol | |
ID | 5194624 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5494546 |
End bp | 5495346 |
Gene Length | 801 bp |
Protein Length | 266 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 640589383 |
Product | extracellular solute-binding protein |
Protein accession | YP_001270202 |
Protein GI | 148550100 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.733781 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAAGA AATACCTTTC GCGACTGCTG GTCGGTGTGA CCGCCCTGGT CGCCGTGACC GCGGCCCAGG CGGGCGCCAT CGATGACGCG GTCAAGCGCG GCACCTTGCG GGTGGGCATG GACCCAACCT ACATGCCGTT CCAGATGACC AACAAACGTG GCGAGATCAT CGGCTTCGAA GTCGATATCC TCAAAGCCAT GGCCAAGTCC ATGGGCGTGA AGTTTGAGGC AGTGTCCACC GCCTATGACG GCATCATCCC GGCCTTGCTG ACCGACAAGT TCGACATGAT CGGCAGCGGC ATGACCCTGA CCCAGGAGCG CAACCTGCGC CTGAACTTCA GCGAACCCTT CATCGTGGTT GGCCAGACCC TGCTGATCCG CAAGGAGCTG GCTGGCGAGA TCAAGTCGTA CAAGGACCTG AACAACGAGA AGTACCGCCT GACGTCCAAG CTTGGCACCA CCGGCGAAAT GGTGTCCAAG AAGCTGATCA GCAAAGCCAA GTACCACGGT TACGACAACG AGCAGGAAGC GGTGATGGAC GTGGTCAATG GCAAGGCCGA CGCCTTTGTC TATGACGCGC CGTACAACGT GGTGGCGGTA GAGAAAGCCG GCGCCGGCAA GCTGCTGTTC CTCGAAGAAC CCTTCACCTA CGAGCCGCTG GCCTTCGGCC TGAAGAAAGG CGACTACGAC AGCATCAACT TCATCAACAA CTTCCTGCAC CAGATCAAGC ACGACGGGAC CTACGATCGT ATTCACGATA AGTGGTTCAA GAACAAGGAC TGGCTGAAGG AAATGGAATA A
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Protein sequence | MIKKYLSRLL VGVTALVAVT AAQAGAIDDA VKRGTLRVGM DPTYMPFQMT NKRGEIIGFE VDILKAMAKS MGVKFEAVST AYDGIIPALL TDKFDMIGSG MTLTQERNLR LNFSEPFIVV GQTLLIRKEL AGEIKSYKDL NNEKYRLTSK LGTTGEMVSK KLISKAKYHG YDNEQEAVMD VVNGKADAFV YDAPYNVVAV EKAGAGKLLF LEEPFTYEPL AFGLKKGDYD SINFINNFLH QIKHDGTYDR IHDKWFKNKD WLKEME
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