Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4878 |
Symbol | |
ID | 5191096 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 5472026 |
End bp | 5472943 |
Gene Length | 918 bp |
Protein Length | 305 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640589363 |
Product | poly(3-hydroxyalkanoate) depolymerase |
Protein accession | YP_001270182 |
Protein GI | 148550080 |
COG category | [R] General function prediction only |
COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
TIGRFAM ID | [TIGR02240] poly(3-hydroxyalkanoate) depolymerase |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.636657 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAGTTACA GCGCCGTGGC GGCCTGCGGG GCGCCACGGT GTTTACTTCA CCCAAGAGTC ACGTGCATGC CGCAACCCTA TATTTTCAGG ACCGTCGAGC TGGACCACCA GTCCATCCGC ACCGCTGTTC GCCCTGGCAA ACCGCACCTG ACGCCGTTGC TGATCTTCAA CGGCATCGGC GCCAACCTCG AGCTGGTGTT CCCGTTCATC GATGCACTTG ACCCGGACCT GGAAGTCATC GCCTTCGATG TGCCTGGGGT CGGCGGCTCG TCCACACCAC GCCACCCGTA TCGCTTCCCT GGGCTGGCCA AGCTGACCGC ACGCATGCTC GACTACCTCG ACTACGGCCA GGTCAACGTC ATCGGCGTGT CCTGGGGCGG CGCCCTGGCC CAGCAGTTTG CTCACGATTA CCCCGAGCGC TGCAAGAAAC TGGTGCTGGC CGCCACCGCT GCCGGTGCGG TAATGGTGCC AGGCAAGCCC AAGGTGCTGT GGATGATGGC CAGCCCCCGG CGTTACGTGC AGCCGTCGCA TGTCATCCGC ATTGCACCGA TGATCTATGG CGGCGGCTTC CGACGTGACC CCGACCTGGC CATGCACCAT GCTGCCAAAG TGCGCTCCGG CGGCAAGCTG GGCTACTACT GGCAGCTGTT CGCAGGGCTC GGCTGGACCA GCATCCACTG GCTGCACAAG ATCCAGCAGC CCACCCTGGT ACTGGCCGGT GACGACGACC CGTTGATCCC GCTGATCAAC ATGCGCCTGC TGGCCTGGCG GATTCCCAAT GCCCAGCTAC ACATTATCGA CGACGGCCAT CTGTTCCTGA TCACCCGTGC CGAAGCCGTC GCCCCGATCA TCATGAAGTT CCTGCAGGAA GAACGTCAGC GTGCGGTCAT GCATCCCCGT CCGGCCTCGG GGGGGTGA
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Protein sequence | MSYSAVAACG APRCLLHPRV TCMPQPYIFR TVELDHQSIR TAVRPGKPHL TPLLIFNGIG ANLELVFPFI DALDPDLEVI AFDVPGVGGS STPRHPYRFP GLAKLTARML DYLDYGQVNV IGVSWGGALA QQFAHDYPER CKKLVLAATA AGAVMVPGKP KVLWMMASPR RYVQPSHVIR IAPMIYGGGF RRDPDLAMHH AAKVRSGGKL GYYWQLFAGL GWTSIHWLHK IQQPTLVLAG DDDPLIPLIN MRLLAWRIPN AQLHIIDDGH LFLITRAEAV APIIMKFLQE ERQRAVMHPR PASGG
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