| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_4271 |
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| Symbol | |
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| ID | 5195431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4772668 |
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| End bp | 4774350 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640588748 |
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| Product | polypeptide-transport-associated domain-containing protein |
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| Protein accession | YP_001269579 |
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| Protein GI | 148549477 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.214751 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAGCC TGATTCACCG CATCGCCCAT TGGCTGTCGG CCAGTTGCCT GTCAGGCGTG
CTGTCCATTC CCCACGTGCT GGCCGACGAC CCTGCCAGCC AGCAGTTGCG CGATCAACAG
CATGGGCTGC GGCAACTGGA GCAACAGCAG CGGCTGGAGC GCTGGCGGCG CATCTCCGCC
CCGACTGAAC CGACCAACAG CACTTCCCAG CGACCGCACG ATGATCGCTG CTGGGCAGTC
GATGGCGTGC GCGTGGCGGG CATGCACCGG CTTTCGAGCT CGGCACTGGC GCCCACCCTC
CGTGCGCTCA CGCCTGCCTG CATGGGCATC GCCGACATCA ATCGGCTGCT CAAAGCCATC
ACCCAACGTT ATGTACAAGC CGGCTACCCA ACCAGCCGAC CCTACCTGCG ACAGCCCCCA
GAACAAGGCA TGCCGTTGGA CATCGTCATT GTCGAAGGCT TTGTCGAAAC CATCGAACTG
GCAGGTCCCG ACCTGCCCCT GTCCCTCTCC AGTGCCTTCC CAGGCCTGCT CGGGCAGCCA
CTTTACCTGC CCGACCTTGA GCAAGGCCTG GACCAGCTCA ACCGCCTTCG CGCCTATGAA
CTGGGCGCCA CCTTGCTGCC CGGCGAACTG CAAGGCGGCA CCCGCGTGGT CGTGCAGCCG
GGCAAGGTTG CTTCACGCTG GCACCTGGAC AGCCGCTTCG ACAACCGGGG CAGCGAGCTG
ACGGGCCGCC ACCGCGTCAA CCTCGGCATT GGCCTGGACA GCCCGCTTGG CCTCAATGAT
GAGCTGCGCC TGTCGTGGAC CCGCACGGTG CTCGATACGC CCGGCCAAAG CCAAGGGATA
TCGTTGTACT ACAGCATCCC CTACGGCGCC TGGACCTTTG CCCTCAGCGC CAGCCAGCTA
AGCTATCAAG CCCCACTCCC CTACAGCGAC AAGGCTGCCG ACGGCAGCAG CAGCTATCAG
GGCCTGAGTG TCGAGCGGGT GTTGTGGCGC AACCAGCAAG GCATGCTCAG CGCCAGCGCC
CGGCTGGACC GCAAGCAGCT GATCAACCGC AGCGCTGGCG CAGTTATCGT CCAGCAGAGC
CCGACGCTGG CCACGGTAGA GGCCGGCCTC AACCTGCTGT GGCTCGAAAG TGGCCTGTGG
AACGGTTACT TCGGCGTTGC CCAAGGCATT GACGCATTGG GTGCCGACCG CTCGCCCCTG
GGTGCTCAAC GCCTGCGCCC GGACTTTCGC AAATACCGCG CCAACCTGCT GCACCTGCGT
CAGGGCCCGG CACCCAACCC TTGGCGCTGG CAGAGCGAGC TGGCCCTGCA GTACAGCCGC
GACCCGCTAC CTGCCGTCGA ACAACTGCTG GTCAGCGACG ATTCGGCTGT CCGCGGCTTT
CGTCTGCACA CTTACTCCGG TGCCAGCAGC GCCGTCTGGC GCAATACGTT CAGCCAAGCG
CTGCCACTGA CCTGGGCCCA CCCCTTCGAG ATACGCCCCT ACATCGGCCT GGACCAGGGC
TGGGTTCGCA CCGCCGAAGG CAAACCGTCA CAGCGCCTGG CCGGGGCCGC CGCAGGGTTG
GAACTGAGCC TGCCCGGCAG CCGCCTGCGC CTGGACTACC AACGCGCCTT GTACACCAGT
GACCTGCCCC GCCCGCTGCT GGAGCCCGGC TTCTGGGTGC TGGACTGGAC CCTGAACATC
TGA
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| Protein sequence | MPSLIHRIAH WLSASCLSGV LSIPHVLADD PASQQLRDQQ HGLRQLEQQQ RLERWRRISA
PTEPTNSTSQ RPHDDRCWAV DGVRVAGMHR LSSSALAPTL RALTPACMGI ADINRLLKAI
TQRYVQAGYP TSRPYLRQPP EQGMPLDIVI VEGFVETIEL AGPDLPLSLS SAFPGLLGQP
LYLPDLEQGL DQLNRLRAYE LGATLLPGEL QGGTRVVVQP GKVASRWHLD SRFDNRGSEL
TGRHRVNLGI GLDSPLGLND ELRLSWTRTV LDTPGQSQGI SLYYSIPYGA WTFALSASQL
SYQAPLPYSD KAADGSSSYQ GLSVERVLWR NQQGMLSASA RLDRKQLINR SAGAVIVQQS
PTLATVEAGL NLLWLESGLW NGYFGVAQGI DALGADRSPL GAQRLRPDFR KYRANLLHLR
QGPAPNPWRW QSELALQYSR DPLPAVEQLL VSDDSAVRGF RLHTYSGASS AVWRNTFSQA
LPLTWAHPFE IRPYIGLDQG WVRTAEGKPS QRLAGAAAGL ELSLPGSRLR LDYQRALYTS
DLPRPLLEPG FWVLDWTLNI
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