| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3966 |
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| Symbol | |
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| ID | 5191171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4475583 |
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| End bp | 4476767 |
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| Gene Length | 1185 bp |
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| Protein Length | 394 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640588439 |
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| Product | peptidase M42 family protein |
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| Protein accession | YP_001269274 |
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| Protein GI | 148549172 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1363] Cellulase M and related proteins |
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| TIGRFAM ID | [TIGR03106] hydrolase, peptidase M42 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.123914 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGAAC GACTCCCCGA ACCCGATCTC GACTACCTCA AACGCGTGCT GCTGGAAATG
CTCGCCATCC CCAGCCCCAC CGGCTTCACC GACACCATCG TGCGCTACGT GGCCGAACGC
CTGGATGAGT TGGGCATCCC CTTCGAGCTG ACCCGCCGCG GCACCATCCG CGCCACGCTG
AAGGGCCGGC AGACCTCGCC CGACCGCGCC GTCTCTGCCC ACCTGGATAC CATCGGCGCC
AGCGTGCGCC AATTGCAGGA CAATGGCCGC CTGGCCTTGG CGCCCGTCGG CTGCTGGTCC
AGCCGTTTTG CCGAAGGCAG CCGGGTTAGC GTGTTCACCG ATACCGGGGT ATTCCGTGGC
AGCGTGCTGC CGCTGATGGC CAGCGGGCAT GCCTTCAATA CCGCCATCGA TCAGATGCCG
GTGAGCTGGG AGCATGTGGA AGTGCGTCTG GATGCCTACT GCGCCACCCG CGCCGACTGT
GAGGCACTGG GTATCAGCAT TGGTGACTTC GTGGCCTTCG ACCCATTGCC CGAGTTCACC
GAAAGCGGCC ACATCAGCGC CCGTCACCTG GACGACAAGG CCGGCGTAGC CGCATTGCTG
GCGGCATTGA AGGCCGTGGT GGAAAGCGGT CGCCAGCCGC TGATCGACTG CCACCCGCTG
TTCACCATCA CCGAGGAAAC CGGCTCGGGC GCAGCCGGCG CCCTGCCTTG GGATGTCAGC
GAGTTCGTCG GCATCGACAT TGCCCCGGTG GCACCCGGCC AGGCGTCAAG CGAGCATGCG
GTGAGCGTGG CCATGCAGGA CTCGTCGGGG CCTTACGACT ACCACCTGTC CCGGCACCTG
CTGAAACTGG CCGGCGACCA TGACTTGCCG GTACGGCGCG ACCTGTTCCG CTACTACTTC
AGCGATGCCC ATTCGGCGGT GACTGCCGGG CACGATATTC GTACCGCGCT GGTGGCGTTC
GGTTGCGATG CCACCCATGG TTACGAGCGC ACCCATATCG ACAGCCTGGC ATCGCTGAGC
CGGTTGTTGT CGGCGTACCT GCTGAGCCCG CCTGTGTTTG CTAGCGACTC GCAGCCGGCC
AATACGTCAC TCGAGCGCTT CAGCCACCAG CTGGAGCATG ATGCGCAGAT GGAGAGCGAC
ACGCGGGTAC CGGCCGTGGA CAGCCTGGTC GGAAACAAAG GCTAA
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| Protein sequence | MSERLPEPDL DYLKRVLLEM LAIPSPTGFT DTIVRYVAER LDELGIPFEL TRRGTIRATL
KGRQTSPDRA VSAHLDTIGA SVRQLQDNGR LALAPVGCWS SRFAEGSRVS VFTDTGVFRG
SVLPLMASGH AFNTAIDQMP VSWEHVEVRL DAYCATRADC EALGISIGDF VAFDPLPEFT
ESGHISARHL DDKAGVAALL AALKAVVESG RQPLIDCHPL FTITEETGSG AAGALPWDVS
EFVGIDIAPV APGQASSEHA VSVAMQDSSG PYDYHLSRHL LKLAGDHDLP VRRDLFRYYF
SDAHSAVTAG HDIRTALVAF GCDATHGYER THIDSLASLS RLLSAYLLSP PVFASDSQPA
NTSLERFSHQ LEHDAQMESD TRVPAVDSLV GNKG
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