| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_3834 |
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| Symbol | |
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| ID | 5190500 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida F1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009512 |
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| Strand | + |
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| Start bp | 4307156 |
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| End bp | 4312327 |
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| Gene Length | 5172 bp |
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| Protein Length | 1723 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640588301 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001269142 |
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| Protein GI | 148549040 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.806398 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGTGC ATTCCAACGC CTTCAACTTT TCAAGTTTCG TTCAAGGCAG TGTCGACCCG
CGCACCGGCC AATATGCGTT AAGCATCGAC CTGCCAACAC TTAACGCCAA TAACCTGTGC
GGTCCCGACC TGCCGTTGCA GCTTAATTTC AACCCGATGA ACAACGAGAA GACGGGGTTC
GGTACTGGCT GGAGCCTGAA ACTGACGCGC TTTACCGTCT CCAGCGGCAT GCTCAACCTG
CACAGCGGTG AAAGATTCAA GGTCGACAAC AATGGTCCTG GGGAGGCTGC CGTCATCGCG
GAGCGTAAGC TGGAAAGTTT TCACTTCAGC GATATCAGCG AGGGCGAACA GAAACGCTTT
CGCATTGCGC ACAAGTCGGG CCTGACCGAA ATCCTCGAAC CACGCGACGC CAACTATGAT
TGGGCAGTGC CGGTACGGGT ACTGGCGCCG TCAGGGCATG GCATCAACCT GCACTACGCA
CCAGACAAGA CCACGCCGCA CCTGACATCG ATCAGCGATG ACAGCAAGCG CGTGTTACTG
CGCATTGATT ACACCGGCAA CGCCGAGGTA CTTGTAGATA TAAACCCGGG CACCGAGGCT
CATGCCCGGT TTACCTTGGG ACTGCAAGGT GGTCACCTGA CAAGTGTGAA CCTGCCGGGC
CCCGACAAAG CAGCCTGGCA GTTTGACTAC GTCGCCTATG ATAACGATAC CCTGTACTAC
CTGACCCGCC TGGAAAACCC CGTCGGTGGC ATCGAAACGA TTAGGTACAA GGTGGACGGC
CATGCGTTTC CAGGGGTGGA AGGCAAATAC CTGCCCTACG CCACCGAACA CATCCTTCAG
CCCGACCCGC TGGACGATAC CACCTACCTG AAAAACACCT ACGCGTTCAG CAACAACAAC
TTCCTGGGCA ATGGTGCCGG CGTCAGTTGG TCCGACACGG GTCTAGACAT TCTCTACGAC
TCCCCTGATC CCACCTTCCG TTATCAGTCC ACAGCACACC ACCACTTGGG CGACCAAGTG
CTGCGAACGG TCACACGCAC CTTCAACCGC TTTCATCTCC TGACCGAACA GGTCACCCAA
CAACAGGGTT GCATCGAAAC CGTCACGACC AAGTACCACG AAGTAGACAA TCTGAACTTC
AAGGCTCAGC CCAACCATTT CCAGTTGCCC CACCAAGTGA CCAAGTCCTG GACGCTGGAC
GGCAACTCCA ACAAGCGCCG CGATGAAACC CTGGTGACCC TGTACGACAC CTTTGGCAAC
CTGACCGAGG AGATTCAGGC CAACGGCATA CGCACGGTAC GCGAGTACTA CTCCAATGGA
TGCGAAGGCT GCCCGGAAGA CCCAGAAGGC TTTGTGCGCA ACCTGAAATG TGAAACGGTC
TACCCGGCGC CCGTGGCCGA CAGCTCACTG GATGCTGCTC CGATCAAGCG CAACCGCTAT
CGGTACGTCA AACTACCCGC TCTGGCCCAG GCTACATCCC AGCAACTGCC CAACCACTGG
CTGGCACTGG AGAACGAGGA CACCTTCGAG GTCAAGATCG AGGCACGCGC TGGCGGGCAG
AAAGCAGAAA CAGAACACCT GCTGCACAGT AATCACCGCT ACTACCTGAA CATGCCTGAA
AATCCACTCT TGCATGGCCG CACCGACAAG CATGAGTTCA GCATGAACGG TTTCTCGGCC
AGTACCGCCT GGCGCTATGA GATCACCAAT GATCTCGACG GTAATCCTAC CTGGCTGCAG
ACCAAAGAAA CCTACAAAGC ACCCGGCGGC ACGCTCGAAA CGACGACCCG CGCCGCGCAG
TCGATCCTTA GTGGCCAGTT GGTCGAAGAT GAAGATCTCA ATGGCGTGGT GAGCCGCTTC
CGCTACGACA TGCTGAACCG CCTGATAGAG CACACTACGG CGCCCGACAG CGTTTACCAG
GCCACCCGTA GCTACGCCTA CCGATTCTTC ATCGATGAGG GACGAAAACG CTCCTATGAC
CAAGTCACTG ACGCCAAAGG GGTGATCACA CGGGTGGTTT ACGACGGCCT GAACCGGCCG
ATCAGGGAAG AGCGCGAGGT CATCGTTGCT GGCGACCCAG CAACGCGCCT GACGCGCACG
CTATCGACGT CACGCTATGA CTCGGCAGGC CGCCTCACCC GCGAGACGCT CTACGACTAC
CCACCTGTCG ATGCCGGCGC ACAGGCCCCG CAACAGCCCG ACGTCACCAC GACCTATGAC
TATGGCTACG ACGGCTGGGG TGCACGCAGC CAGGTATTCC GCTCGGATGG CGTCACGGAG
TTCACGGACT CCACACCGTT CGGCGTAGGC GGCGATCTGG TCACCGAGTG GATTGAAACC
CGGGACCAAC CGGGCGTCAG GCAGAATGTG CGGGTCAGCC AGCTGAATGC CTTCAACAAA
CCATCCTACG AGTACCGCCA GATCGAAGAG CCAGGTCAAC CACCGGTGCA AGTCGGCCGC
ACGGACTACG TCTACGATGG GTTTGGCCGC TGCACCCAGG ACACTTTCAG CTCCACCACA
CCGGGCAGCA AGGCAGTACC CCGCATCCGC AAATTCAGCT ATGACGTCTG GGGACGCATG
TACAAAACCG TGCGCCCGAA CGGTAGCGCG CTGCTGCGTA GCTTCGTCGG GTACAGCGTG
GAGGAACTCA CCACCAGGCT GGAAGTGCAA GAAGCGGGCA GCGACACCGC CGAAACGGTA
TTCAGCCGCA GCTACGATGG CCTGGGCAGG CTGAAACAGG TGAAGATCGG CCCACGGATC
GAGGACTACG ACTACGTGAC GCAGACCTTG CTGATCGACA AGCGTACGGC TTACGCACAA
GACAAGAACC GCAAGCGCGT CATCCAATAC AATTACCTGC CGCAGCTGAC TGAACAACCC
ACCATGCTGG ATGCCAGTAT CGAAGTGCCA GGGCAACGGC ATTCCACTAC GCAGGCCATC
TTCGGCTACG ACAAGACCAC CGCGCAGATA TCGAGCGCCG ACAACGGCAA TGGCCGACAC
GGGTATGAAT ACACCCAGGA GGGCTACCTG GCTAAAGACA CCTGGATGGT CGGTGGCAAA
GAGCAACACC ACAGTGACTA CAAACACTCC CTTCAAGGCA GGATACGCAC TCGCAAGCAC
TCCGATGGCC ACGAGTGCGA ATACGGTTAT GACGCCGAGG GCCGCGTAAA CAGCATCAGC
CAAGGGGCGC TGCACAGTGT TCTCAAGTAC AACAGCCAGG GTTTGCTGTG CAGCACCGAA
ACCCGTGACG GCGGGAATGC CGATCGCCGC GTGCTGTGCA CCCAGACATA CGATGCCCTG
GGCCGTGAGA AAACACGCAC GCTGACCGTA AATGGCGCTG CAGAACAAGT GTTGAGCCTG
GAATGGTACG ACAATGACTT GCTCTATAGC CGTACGCTGG TTCGGGACGC AAAGGAGGTG
CGCAAGGAAA CCTTCGAGTA CGATGAACTC GATCGCTTGG TCCAGTACAC CTGCACTGGC
GAGGACCTGC CCAGCGACAC CAAAGGGCGC CAGATCAGTG TCCAGCTGTT CCGCCTCGAC
GATTTGGACC GGCTTACCCG TCGCGCCACC GAGTTTGCCG ATGGCAACAG CGAGAGAGCC
GACTTTACCT ACAAAGAGGA TGGCAGTTTC CAATTGGAAA AGGTTGGCTA TCGCCTGTTC
GAGGGCTACA CCGCCCAACA GGCCTTCGAC TATGAATGGC AGGCATTCGA AGAGGAGCAG
ACATTCGACG AAGAGCAGAC GTTCACCTAT GACGAGCAAG GCAACATGCT CAATGACGAA
CTTGGCCGCA AGCTTGAGTA CGACACCCTT GGCCGTTTGC AACGGGTTAT CGATGTCGAC
GGCAAAACCA CGCTGGTGGA GTACCAGTAC GACGGGCATG ATCAATTGCT GGCATCGCGG
CATGCCGACG GCCGCCAGGT ACATCGCCGT TTCCTCGGCC ATCAGCTGGA CAGCACGCTG
GAAAACGATG TCCTGACCCA ATACCTGTAC AGCGGCATCC AGCCCCTGGG CGTTCAGCAA
TACCCGGCTG CCCCCGAGGC CACACGGCTG CTGCACAGCG ATATCGCCGG TAGCGTGGTC
AGCGAAACCG ATGCCCAGGG TACCCGCCAC GCCAACTACA GCGTCTATGG CGAGCGCCCT
GCCGACAACG GCATGCGCAC CCTGCTGGCG TTCAACGGCG AAGCCCGCGA GGAAGCGCTT
GGCTGGTATC TGCTCGGCAG CGGCTATCGT GCGTACAACC CAGGACTGAT GCGCTTCCAC
AGCCCAGACT CGCTAAGCCA GGAGGAAGCA GGCATCAACC CCTACCTGTA CGCCCTAGGC
AACCCGGTGA ACTGGCGCGA CCCTACCGGG CACCGTGTCC AAGGCATCCC TCCTGACCGT
GTACCACCAT CGTATATCGA CCCGCCCGAG AAGCCCAAAG CGCCTTGGGG TGCGTGGATA
AGCGTGGCCG TAGCCGGGGC GATATTTCTC GCTTCGGTAT ACTTCATGCC GTGGTCGGCG
CCATTGAGTC TTAGTTTACT CCCTAAGTTC ACCTTGGGGG TCGCGGGTGT CACCGCCAAC
GGCCTCGCGT TCGCTGGACA GATCTATATC GCCGTCAACA ATGATGAGGA CCAGAACCTG
CAATACATAC TCTTTGGACT CTCCTTTGCG GGCGGTTTCG CTTCGGGGGT CGGGATCAAG
GCTACCAGAG CGGCGCTCCA CGCGGCCAAA GCGGCTGCCG CCAGAACGAG TGGAATAAGC
GCAGCGCTCA AAAACATGGG CGAGATGAAC GCAGGTATCA TCAAACAGGG GGGCAATCTC
GCACCAGTGG CAAACGCATC TCCTGCCGGT GGGGGTATGC TCTCCCGAGC CTCGATATCG
GCTACCAGGG GAAGTAACAG CCCAAGGATC TTGACCAGAA CAAATTCTAA CAGGTCGGTG
GTTAACTCTT CGAATACTTC TCGGAATTCA CCTAACCCCA CCCGTTCCAA CTCCGTCACG
AGCCGTACCT CGAACAACAA TTCCCGCGGG GAAAACTTCG CTGAGATAAC CCAAAATTCT
GGTCAATCGT CTGGCACTTC AACGCCGTCC TCACCTGTCT GGCTGAAGGG TCCACCGGAT
TTTACGAGAG CATTCGAGTG GGCAGAACCA GGAAAAGGTA TACGTTCCGG ATACTTTAGA
TATTTAGATT AA
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| Protein sequence | MSVHSNAFNF SSFVQGSVDP RTGQYALSID LPTLNANNLC GPDLPLQLNF NPMNNEKTGF
GTGWSLKLTR FTVSSGMLNL HSGERFKVDN NGPGEAAVIA ERKLESFHFS DISEGEQKRF
RIAHKSGLTE ILEPRDANYD WAVPVRVLAP SGHGINLHYA PDKTTPHLTS ISDDSKRVLL
RIDYTGNAEV LVDINPGTEA HARFTLGLQG GHLTSVNLPG PDKAAWQFDY VAYDNDTLYY
LTRLENPVGG IETIRYKVDG HAFPGVEGKY LPYATEHILQ PDPLDDTTYL KNTYAFSNNN
FLGNGAGVSW SDTGLDILYD SPDPTFRYQS TAHHHLGDQV LRTVTRTFNR FHLLTEQVTQ
QQGCIETVTT KYHEVDNLNF KAQPNHFQLP HQVTKSWTLD GNSNKRRDET LVTLYDTFGN
LTEEIQANGI RTVREYYSNG CEGCPEDPEG FVRNLKCETV YPAPVADSSL DAAPIKRNRY
RYVKLPALAQ ATSQQLPNHW LALENEDTFE VKIEARAGGQ KAETEHLLHS NHRYYLNMPE
NPLLHGRTDK HEFSMNGFSA STAWRYEITN DLDGNPTWLQ TKETYKAPGG TLETTTRAAQ
SILSGQLVED EDLNGVVSRF RYDMLNRLIE HTTAPDSVYQ ATRSYAYRFF IDEGRKRSYD
QVTDAKGVIT RVVYDGLNRP IREEREVIVA GDPATRLTRT LSTSRYDSAG RLTRETLYDY
PPVDAGAQAP QQPDVTTTYD YGYDGWGARS QVFRSDGVTE FTDSTPFGVG GDLVTEWIET
RDQPGVRQNV RVSQLNAFNK PSYEYRQIEE PGQPPVQVGR TDYVYDGFGR CTQDTFSSTT
PGSKAVPRIR KFSYDVWGRM YKTVRPNGSA LLRSFVGYSV EELTTRLEVQ EAGSDTAETV
FSRSYDGLGR LKQVKIGPRI EDYDYVTQTL LIDKRTAYAQ DKNRKRVIQY NYLPQLTEQP
TMLDASIEVP GQRHSTTQAI FGYDKTTAQI SSADNGNGRH GYEYTQEGYL AKDTWMVGGK
EQHHSDYKHS LQGRIRTRKH SDGHECEYGY DAEGRVNSIS QGALHSVLKY NSQGLLCSTE
TRDGGNADRR VLCTQTYDAL GREKTRTLTV NGAAEQVLSL EWYDNDLLYS RTLVRDAKEV
RKETFEYDEL DRLVQYTCTG EDLPSDTKGR QISVQLFRLD DLDRLTRRAT EFADGNSERA
DFTYKEDGSF QLEKVGYRLF EGYTAQQAFD YEWQAFEEEQ TFDEEQTFTY DEQGNMLNDE
LGRKLEYDTL GRLQRVIDVD GKTTLVEYQY DGHDQLLASR HADGRQVHRR FLGHQLDSTL
ENDVLTQYLY SGIQPLGVQQ YPAAPEATRL LHSDIAGSVV SETDAQGTRH ANYSVYGERP
ADNGMRTLLA FNGEAREEAL GWYLLGSGYR AYNPGLMRFH SPDSLSQEEA GINPYLYALG
NPVNWRDPTG HRVQGIPPDR VPPSYIDPPE KPKAPWGAWI SVAVAGAIFL ASVYFMPWSA
PLSLSLLPKF TLGVAGVTAN GLAFAGQIYI AVNNDEDQNL QYILFGLSFA GGFASGVGIK
ATRAALHAAK AAAARTSGIS AALKNMGEMN AGIIKQGGNL APVANASPAG GGMLSRASIS
ATRGSNSPRI LTRTNSNRSV VNSSNTSRNS PNPTRSNSVT SRTSNNNSRG ENFAEITQNS
GQSSGTSTPS SPVWLKGPPD FTRAFEWAEP GKGIRSGYFR YLD
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