Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_3326 |
Symbol | |
ID | 5191524 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 3744695 |
End bp | 3748882 |
Gene Length | 4188 bp |
Protein Length | 1395 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640587773 |
Product | leucine-rich repeat-containing protein |
Protein accession | YP_001268636 |
Protein GI | 148548534 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.902358 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCCTT CAGTAATACC CGCCGATTCC ATCGATGCGC TGATTGCCCG TCAGTTGCCA GGCTGGCTCA AGCGCGCATC TGCCCAAGAG CTGACAGGCC TGCGCGCCGC TGCTTTGCGC CAACAGCGGG CGCAGGACCA CGTCGACGCC TGGTTAGGGG CTATAACCCC CTTGGATGAG TTCGCCGAGT CGTTGCTCAA ACGTGCGCCC GAGGCTCGTT CGATCAAGCA GGTAGACCTG CGCCAGGCTC AGCTCAGGCT GGTGACCCTG CAGCCAAAAC CGTCGATATC ACCTGCTTTA CCAAGCACGT CAACACGCAT CGTCAGCACC CAGACGCTTC TCTCGGCGGC ACTGCATAAC TTCCACGAAA AGGAAATGCA GCCTGGCTGG TTCGCGGCCG GATCGCAGTT GGTCACTGCC AGCGGGCACC TGCTGCCGCT AAGTGCGCAA GCTTTTGTCC GACTTTGCAG AGACATCGAT ATTGGCAGGC GTTATCAAAG CCATTTGCAA TCGAAGCTGG AAGGCGAGGG GGTGGCCGTC GAGAGCACCC TGGAGGAGGC GTTGAGGGCC AACCTGGCGC TTGCTGCAAT CGCCGCAAGG ATCAAGGGTG AAATCGATGA GCAGACCTGT CAGTGGATCA ACCAGGTGGT GGGCACAGCG TCTTTCCAGC CAGCCGACAA CGCCGTGTTG AAGTGTCACA CCCTGCGGCT GTTGGGGAAG GAGGTCATTG GCGCACTGGT GATCGAAGTG CGTCAGAACG CCCGCCTGCT TGGCGTTATC GCGTGGTTCC CTGAGGACCC GTATGCCCCG GTGAGTTGGC ACACCAGCTG GGAACTGCTG TACATGACCC TTGGCATACG TTTGCGTAAT GAAGCGTATC GGCGCTACTT CCAGCGCTTC GTCGCAGAGC GTGATCGCAT CGCCTTCTGC GCGGCGCTGA ACGCGCTGCT CAGCCACGGT AATACTGTTC TCCCGCTTGA GCTGGATGGC CGCTGTTTTG CGATCGAGGG CGACGTGTTC GTCGCGCTGC GCCAGGCCCG GATCGACAAA ATGCTGGATG ACGCACGGGT ATTGGCCGTT TCGACAGAGG ATGAAGATGT CGCCGACCGT CGCGCACGTT TGCAGGGCTA TCTGGATTTG GGGTTGAGCG TGGCAGGCCT GGCAGCGCTG TTTGTGCCTG TGTTGGGGCA GGCCCTGCTG GGGCTTACGG TGATGCAACT GGCAGGTGAG GTGTACGAAG GCTACCAGGA TTGGCAGTTG GGTGATCGTG ACGCCGCATT GGGCCACTTG TTCAACGTGG CCGACACGGT TGTGATGACG GCGGTGACGA CGGCCGGAGC GACGGCACTT GGCAAGCTGG CCCAGCGAGT GGCGCAGGTG GATGCCTTGG TGCCGGTAAG CCTGGGCGAT GGCCAGTTGC GGCTGTGTGA TCCGTCCTTG TCGGGCTATC AGCGTGAGGG CGTCGATCTG ATGGTAGGGC AGGCCGTGAA TGAAACTGGC CGTTCGCTGA GGCGCCTGCA CGATGCTGTG TATGAAGTGA GCGAAGGGGA CGATGGCGCA TGGCGTATTC ATCACCCATC GAGGCCACAG GCCTACGTAC CGGTACTTGA GCACAATGGT GCCGGGGGAT GGGTGCATGA GTTCGAACAA CCGCAGCGCT GGCATGACGC CGCCTACATG GTGCGCCGCC TTGCCAGTCG CACGGCGCAG GTGCCGGATG AGGTGATATC TGTGGCGTTG CAGACCACCG GTCTGGATGC TGATTGCCTG CGCCGTTTGT TATTGGAAAA TGCGCCCCCG CCGGCACGCT TGCTCGACGC CATCGAGCGC CAGCAATTGC ACCGTGATTT CCCGGCGTTG CGAGGTGAGG CTTTCGAGGA GGTCTTCAAC GAGCGACAGA TCAGCCCGCA AGCAGCAGAC CGGGTCGTGA TGCGGGACTT CCCAGGCCTT TCCCCCCGCT GCGCACGGGA AATCGTCGAG GGGGCCAGCA GTGTCGAGAT GGAGAGCCTG ACTGGCGCAG GCCGGGTGCC CTTGGCCTTG GCGGAACGTG CACGCTGGGC AATACGCGAC AGTCGGCTAG ACCGTGCCTG CGCAGGGTTG CGCCAGGCCG CGGCAGAAAA TGACGATACC GGTAAGCTCG CGCTGGGCCT GCTCGATGCC ATCGCCCCCT GGTCGGCTGG GGTCAACGTT GAGCTGCCTG CCGCGGGCAG GGGTGGGTTG CTGCAGACGT TGAGACGGCA ACTGGACAGC CGGCAGCGAC AATTGCTTGG TATTAGCCAG ATGAGGGATG ACGCACTGGG TGAGCGGCTT GGGCGTGAGG CACTCGCTGA CCGTGAAGCG GCGGCCCGAA TGATTGGGCT GGCCCGTGTG GGGCAGGGGA TTCGCCCTCC TGTGCGGTTG TTCGATGGGC GTTTGGGCTA CCCGCTCAGT GGCCACCTGA CAGGCACCCG CCAGGCACTG CGGCGCACGT TGAACCACGT GTTCCCGGTG ATGAGCAGTG AGCAGCTGGA GGTCTACCTG CAAGACCTGG CACAGCGGGG GGTGGACCCG TGGAACCATG TCAGCCAACT GTTACAGGCC AAGGTCAGCC TCAAGCAGGC ATTGCAAGCC TGGCGAAATG ACGCAGGGCT GAACATTGTT CGCCGCCTGC GTCGTATCAA GGTTGCCAGG CGCATTACGG CAAGCTGGCA GCGCTTTACC CCTGGGGAGG TGGCGGGTGA CTACCACCTG ACCCTCGTGG GTGAGCGGGT GGGTGACCTG CCGGCTTTGC CTGAAAATGT GAGTTTTGAC CACATCACGC ACCTGACCCT GCGCGATATG CAGCTGACGA GCCTTGATGC GGGCTTTTTT GGTCGCTTCA GCAAGGTGCG CAACCTGGAC TTGCGGAACA ACCGGCTGAC ACGCCTTCCT GCAGGTATCG AGCAACTGAC CGAATTGAAA AACCTGCGCC TTGGCGGCAA CCAGATCGTG CTTTCCAGCG AGGATAACCT GCGTTTGAGC CAGCTTGTGG AACTGCGCCG CCTGGAGCTC AACGGCAACC CGGTCGGTTT GCTGCCACCC TTGGCGTCTT TCCCCCTGCT GCGCCGGCTG TCCTTGCGCA ACACCGGGCT GGGCGAACTG CCCGCTGATC TGGCCAGGCA CGGTAATCTG GAGTTGCTGG ACATGCGTGA CAACCAGATC CAGACGCTGC CTGAAGCGTT GTCTTTAGTG CCGCTTCGCC TGTGGCGGGG CCTGGAGCTG CACGACAATC CACTCTCGGA CGAAACCCTG CAGCGCTTGC AGTTGGCCAG GGCGTCGGCC GGGGCTGCTG AGCGTCGACG TGCAGCTCAT GCCACTTCGA TCCCGAACGC TGCAGCCCCT TGGTTTTCAG GGTTCACGCC AGCCCAGCGC GAGGTGCGAT TGGCGAGCTG GAACCGCTTG AGCCAGGAAG CCGGGGCGCA GGATCTGTTT CGCTTTTTCT CTGATTTACG GGCCCTGCGT GAATACGACG CACAACCGCG CGACCTTCAG GCGCGGGTGT GGCATATCCT CGAAGCCTGC GAACAGCACG CTGAAGTACG CGCGAGCCTG TTCGAGCAAG TTGCCCGGCC GCGCAGTTGC AGCGACGAGT TGCTGCTGAC GCTCAGCGAG CTGGAGGTTG GCGCGCTGGT CGCCAAGGCC GGAACAGCCG GTACCGGGTT GCAGAAAGAG CGGGCGCTGG TCAGGCTGGG GCGTTCGTTG TTCCGCCTGG ACAAAGTCAA CGCAATTGCC GCGCGGCATA TTGCGGATTA CTTTTCGAAC GATCCCGTAG AGGTTTACCT GACCTATCGC GTCAGGCTGG CGGATAGCCT CGACCTTCCC GTGCAGCCCA GCCATCTTTC GTATGAGAGT TTCAGCGGGG TTGGCCGCGA AGACCTGGAC GCCGCGCGCA GCGAGGTGCT GCGGCAGGAA ACGCCACAAG CGTTGGCGCA GGCGCTGGCA GATCGATCCT TCTGGCAGGA CTACCTGCAC GAGCAGCAGG CGGCGCGCTT CAGCCGCCTG GACGAGCCTT TTCAGCAGCG CCTGGATGTG TTGCTGGAAC AATCGAAAAC GCTGAGCGAT GGCGACTATT TTGCCCAGGT CGAGCATATC TGCGCAGCGC GTGAGGTCGC GAAACGGCAG CTTTTGCTTG AATTGAGCCG AGAGGCAATT CAACGCCACG GCCTATGA
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Protein sequence | MTPSVIPADS IDALIARQLP GWLKRASAQE LTGLRAAALR QQRAQDHVDA WLGAITPLDE FAESLLKRAP EARSIKQVDL RQAQLRLVTL QPKPSISPAL PSTSTRIVST QTLLSAALHN FHEKEMQPGW FAAGSQLVTA SGHLLPLSAQ AFVRLCRDID IGRRYQSHLQ SKLEGEGVAV ESTLEEALRA NLALAAIAAR IKGEIDEQTC QWINQVVGTA SFQPADNAVL KCHTLRLLGK EVIGALVIEV RQNARLLGVI AWFPEDPYAP VSWHTSWELL YMTLGIRLRN EAYRRYFQRF VAERDRIAFC AALNALLSHG NTVLPLELDG RCFAIEGDVF VALRQARIDK MLDDARVLAV STEDEDVADR RARLQGYLDL GLSVAGLAAL FVPVLGQALL GLTVMQLAGE VYEGYQDWQL GDRDAALGHL FNVADTVVMT AVTTAGATAL GKLAQRVAQV DALVPVSLGD GQLRLCDPSL SGYQREGVDL MVGQAVNETG RSLRRLHDAV YEVSEGDDGA WRIHHPSRPQ AYVPVLEHNG AGGWVHEFEQ PQRWHDAAYM VRRLASRTAQ VPDEVISVAL QTTGLDADCL RRLLLENAPP PARLLDAIER QQLHRDFPAL RGEAFEEVFN ERQISPQAAD RVVMRDFPGL SPRCAREIVE GASSVEMESL TGAGRVPLAL AERARWAIRD SRLDRACAGL RQAAAENDDT GKLALGLLDA IAPWSAGVNV ELPAAGRGGL LQTLRRQLDS RQRQLLGISQ MRDDALGERL GREALADREA AARMIGLARV GQGIRPPVRL FDGRLGYPLS GHLTGTRQAL RRTLNHVFPV MSSEQLEVYL QDLAQRGVDP WNHVSQLLQA KVSLKQALQA WRNDAGLNIV RRLRRIKVAR RITASWQRFT PGEVAGDYHL TLVGERVGDL PALPENVSFD HITHLTLRDM QLTSLDAGFF GRFSKVRNLD LRNNRLTRLP AGIEQLTELK NLRLGGNQIV LSSEDNLRLS QLVELRRLEL NGNPVGLLPP LASFPLLRRL SLRNTGLGEL PADLARHGNL ELLDMRDNQI QTLPEALSLV PLRLWRGLEL HDNPLSDETL QRLQLARASA GAAERRRAAH ATSIPNAAAP WFSGFTPAQR EVRLASWNRL SQEAGAQDLF RFFSDLRALR EYDAQPRDLQ ARVWHILEAC EQHAEVRASL FEQVARPRSC SDELLLTLSE LEVGALVAKA GTAGTGLQKE RALVRLGRSL FRLDKVNAIA ARHIADYFSN DPVEVYLTYR VRLADSLDLP VQPSHLSYES FSGVGREDLD AARSEVLRQE TPQALAQALA DRSFWQDYLH EQQAARFSRL DEPFQQRLDV LLEQSKTLSD GDYFAQVEHI CAAREVAKRQ LLLELSREAI QRHGL
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