Gene Pput_3184 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_3184 
Symbol 
ID5190975 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand- 
Start bp3598526 
End bp3599149 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content64% 
IMG OID640587628 
ProductTetR family transcriptional regulator 
Protein accessionYP_001268494 
Protein GI148548392 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.13539 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.42811 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGGAC TGCGCGAGCA GCAGAAGGCG ATGCGTCGTG AAACCATCAG CCGAACGGCG 
CTAGGCCTGT TTGAAACGCA GGGTTACCAG ACCACCACCA TGGAGCAGAT CGCGCGCTTG 
GCCGCAGTAT CGGTGCCCAC GGTGTTTGCT TATTTCGGCA GCAAGCAGGA AATTTTGCTG 
GAGAAGCTCC GCGAGGCCGA CCACCGGGCG GTGACCGAAG CCCGGCGGCG CCTGCCGGAA 
TTCGACGATG CGCTGGAGGC CCTGTGCTGC TACGAAGCGC ACTTGACCGA TTACGCATTC 
GAGGTGCTGC CTGCACCGCT CTGGCGCGAG ATATTGCCGC CGTTGCTGCC GTTGCTGGGG 
GCTGAGCAGC AGGGCGTGCC GGATGCCTAC AGGCGCGTCA ACGACGCGTT GGTCAACGAG 
TTGAAATGCC TGCTACAGGA CTTGTGCGAC AGCGGCAGGC TGGCGGCTGG GCTGGACGTG 
GGCTATGCGG CGTTCCTGAT CAACGATTAC GGGCACCTTC AGTTGCTGCG CCTTTGCAGC 
CGCGAGCCGC TGGACATGAC GGCACACCGG GCGGATGTGC GGCGGTTCAT GGGCTTTATC 
CTGGCCGGCA TGCAAGCGCG ATGA
 
Protein sequence
MSGLREQQKA MRRETISRTA LGLFETQGYQ TTTMEQIARL AAVSVPTVFA YFGSKQEILL 
EKLREADHRA VTEARRRLPE FDDALEALCC YEAHLTDYAF EVLPAPLWRE ILPPLLPLLG 
AEQQGVPDAY RRVNDALVNE LKCLLQDLCD SGRLAAGLDV GYAAFLINDY GHLQLLRLCS 
REPLDMTAHR ADVRRFMGFI LAGMQAR