| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_2698 |
|---|
| Symbol | |
|---|
| ID | 5192344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | - |
|---|
| Start bp | 3074854 |
|---|
| End bp | 3075615 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640587150 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001268016 |
|---|
| Protein GI | 148547914 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.16282 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACCCA ATCCGACAAC CGATAACGCA TTACGCGTTG CGTTGGTGAC AGGATCAACG
TCCGGTATCG GTGCAGCCAT TGCACGTGTC CTTAGCCGGG CAGGCTATGC GGTGGTGCTC
CATTCGCGAA ACTCTGCGGA TACGGGACGC GCGATGGTTG CCGAAATGAA GCAGGCTATT
TACTTGCAAG CTGATCTTGC TGTCGAAACT GACAGGGTCA GGCTTGTTAA CGAGGCTATC
GCCGCGTGGG GGCAGCTCGA CGTACTGGTC AATAACGCCG GTATTAGCAG AGTCATTGCG
CACGGCGACC TTGCCTCTGC CAGTTCGACG GTGTGGCACG AGCTTAACGA GGTTAATGTC
GTGGCACCGT TCCATCTGGT CGCTTTGGCC GAGTCGGCAC TGCGCGATGC CGCCCGTTAC
CGTCGAGCAG GTTGCGTCGT AAACATCAGT TCGCATGCCG GTACCCGTCC TAAGGGCGCA
TCGATTCCCT ATGCGGTAAG CAAAGCTGCG CTAAATCACA TGACCCGCTT GCTCGCGCTA
ACGCTGGGGC CAGACATTCG CGTAAACGCT GTGGCGCCTG GCTTGGTCGA CACGCCTCTG
ACCGCAGAGT GGACAGAGGC CCAAGAATTG TGGCGAACTC GCGCACCTAT GCGCAGGGCC
GCCAGCCCCG ACGACATCGC AAAAGCGGTT GTCATGCTGG TCGAGTCGGA CTACCTGACC
GGCGAGATAC TCCTTTCAGA CGGTGGGTTG AATCTGACTT AG
|
|---|
| Protein sequence | MTPNPTTDNA LRVALVTGST SGIGAAIARV LSRAGYAVVL HSRNSADTGR AMVAEMKQAI
YLQADLAVET DRVRLVNEAI AAWGQLDVLV NNAGISRVIA HGDLASASST VWHELNEVNV
VAPFHLVALA ESALRDAARY RRAGCVVNIS SHAGTRPKGA SIPYAVSKAA LNHMTRLLAL
TLGPDIRVNA VAPGLVDTPL TAEWTEAQEL WRTRAPMRRA ASPDDIAKAV VMLVESDYLT
GEILLSDGGL NLT
|
|---|
| |