Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1513 |
Symbol | fliR |
ID | 5190783 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1696903 |
End bp | 1697679 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640585983 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_001266854 |
Protein GI | 148546752 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.859445 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0902161 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTGGAAC TGACCGATAC GCAGATCGGC ACCTGGGTCG CCACCTTCAT CCTGCCGTTG TTCAGAGTAA CGGCGGTGCT GATGACCATG CCGATTTTCG GTACCCGCAT GTTGCCGGCG CGGGTGCGCC TCTACGTGGC AGTGGCGATT ACTGTGGTGA TCGTGCCTGC ACTGCCACCG CTGCCTGAAT TCGACCCGCT GAGCCTGCGC GGTTTGCTAC TGTGCGCCGA GCAGATCATC GTTGGCGCGC TGTTTGGCCT GGCCTTGCAG TTGTTGTTCC AGGCTTTCGT GATTGCCGGG CAGATTGTTG CGGTGCAGAT GGGCATGGCC TTCGCCTCGA TGGTTGACCC CGCCAACGGG GTCAACGTCA CGGTAATCAG CCAGTTCATG ACCATGTTGG TGAGCGTGCT GTTCCTGTTG ATGAACGGGC ACCTGGTGGT GTTCGAGGTG CTGACCGAGA GCTTTACCAC CTTGCCGGTG GGGAGTGCGC TGGTGGTCAA TCACTTCTGG GAGCTGGCCG GACGCATGGG TTGGGTGTTC GGTGCTGGGC TTTTGTTGAT CCTGCCGGTA ATCGCTGCGC TGCTGGTTGT GAACATCGCC TTTGGCGTGA TGACCCGTGC GGCACCGCAG TTGAATATCT TCTCGATCGG TTTCCCGTTG ACCCTGGTCA TGGGTATGGC CATTTTCTGG ATCGGCCTGG CCGATATCCT CTCCCACTAC CAGGCATTGG CCAGCGAAGC GCTGCAATGG TTGCGTGAAT TGGCAAGGGC GCGCTGA
|
Protein sequence | MLELTDTQIG TWVATFILPL FRVTAVLMTM PIFGTRMLPA RVRLYVAVAI TVVIVPALPP LPEFDPLSLR GLLLCAEQII VGALFGLALQ LLFQAFVIAG QIVAVQMGMA FASMVDPANG VNVTVISQFM TMLVSVLFLL MNGHLVVFEV LTESFTTLPV GSALVVNHFW ELAGRMGWVF GAGLLLILPV IAALLVVNIA FGVMTRAAPQ LNIFSIGFPL TLVMGMAIFW IGLADILSHY QALASEALQW LRELARAR
|
| |