| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pput_0980 |
|---|
| Symbol | |
|---|
| ID | 5190706 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida F1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009512 |
|---|
| Strand | + |
|---|
| Start bp | 1109612 |
|---|
| End bp | 1111051 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640585438 |
|---|
| Product | peptidase U62, modulator of DNA gyrase |
|---|
| Protein accession | YP_001266325 |
|---|
| Protein GI | 148546223 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0312] Predicted Zn-dependent proteases and their inactivated homologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.324796 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGA TGTTATCCAC CGTCAGTGAG CAGCTCCTGG CCCCAGGCGG CTTGACCCTG
GACAGCCTGC AGAGCGTGCT GGGTGAGTTG GCTGGCCCCG GCATCGACGC CGCCGACCTG
TATTTCCAGG GCCAGATCTC GGAAACCTGG GCGCTGGAAG ACGGTATCGT CAAAGAGGGC
AGCTTCAACC TCGACCAGGG CGTGGGCGTG CGTGCCCAGT CCGGCGAAAA AACCGGCTTC
GCCTACAGCA ACGCGATCAA CCTTGAAGCG CTGACCTCGG CAGCCCGTGC CGCCCGTTCG
ATTTCCCGTG CCGGGCAAAA CGGCACGGTG CAAGCCTTCC GCAGCCAGGA GGTGGCCGCT
CTGTATACCG CGGACAACCC GCTGGACGTG CTCAGCCGTG CCGAAAAGGT CGAGCTGCTT
AAGCGTGTCG ATGCCGCCAC CCGTGCCCTG GACCCGCGCA TTCAGCAAGT CAGCGTGAGC
ATGGCCGGGG TCTGGGAACG CATTCTGATT GCCGCGGCCG ATGGCAGCCT GGCTGCCGAC
GTACGCCCGC TGGTGCGCTT CAATGTCAGC GTCATCGTCG AGCAGAACGG CCGTCGTGAA
CGCGGTGGGC AGGGCGGTGG CGGGCGTACC GATTACCGCT ACTTCACCGA AGAGCGGGTG
ATGGGCTATG CCCGCGAGGC CCTGCGCCAG GCCCTGGTGA ATCTGGAAGC GATCCCGGCA
CCGGCCGGAA CCTTGCCGGT AGTGCTGGGC TCGGGCTGGT CGGGCGTGCT GTTGCACGAG
GCCGTCGGCC ATGGCCTGGA AGGCGACTTC AACCGCAAGG GCAGTTCGGC GTTCAGTGGC
CGCATTGGCG AGAAAGTGGC GTCGAGCCTG TGCACCATCG TCGACGATGG CACCCTTGAA
GGCCGCCGCG GCTCGTTGAG CGTGGATGAC GAAGGCACCC CGACCGAATG CACCACGCTG
ATCGAGAATG GCGTGCTCAA GGGGTACATG CAGGACAAGC TGAACGCGCG CCTGATGGGC
ATGGCTGTGA CCGGCAACGG CCGCCGTGAA TCCTACGCGC ACCTGCCGAT GCCACGCATG
ACCAACACCT ACATGCGAGC CGGCGAAAGC GACCCACAGG AGATTATTGC GTCGGTGAAG
AAGGGTATCT ACTGCGCCAA CCTCGGTGGT GGGCAGGTGG ATATCACCAG CGGCAAGTTC
GTGTTCTCCA CCAGTGAGGC CTACCTGATC GAAGACGGCA AGATTACCGC GCCAGTGAAG
GGCGCAACCC TGATCGGCAA TGGTCCCGAG GCGATGAGCC GGGTTTCGAT GGTCGGTAAC
GACCTGGCAC TGGACAGCGG AGTAGGGACG TGCGGCAAGG ACGGGCAGTC GGTGCCGGTT
GGGGTGGGGC AGCCTACCTT GAAACTGGAT GCGATTACCG TGGGCGGTAC CGGGGCTTGA
|
|---|
| Protein sequence | MSQMLSTVSE QLLAPGGLTL DSLQSVLGEL AGPGIDAADL YFQGQISETW ALEDGIVKEG
SFNLDQGVGV RAQSGEKTGF AYSNAINLEA LTSAARAARS ISRAGQNGTV QAFRSQEVAA
LYTADNPLDV LSRAEKVELL KRVDAATRAL DPRIQQVSVS MAGVWERILI AAADGSLAAD
VRPLVRFNVS VIVEQNGRRE RGGQGGGGRT DYRYFTEERV MGYAREALRQ ALVNLEAIPA
PAGTLPVVLG SGWSGVLLHE AVGHGLEGDF NRKGSSAFSG RIGEKVASSL CTIVDDGTLE
GRRGSLSVDD EGTPTECTTL IENGVLKGYM QDKLNARLMG MAVTGNGRRE SYAHLPMPRM
TNTYMRAGES DPQEIIASVK KGIYCANLGG GQVDITSGKF VFSTSEAYLI EDGKITAPVK
GATLIGNGPE AMSRVSMVGN DLALDSGVGT CGKDGQSVPV GVGQPTLKLD AITVGGTGA
|
|---|
| |