| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_4630 |
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| Symbol | |
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| ID | 6113611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | + |
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| Start bp | 5113326 |
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| End bp | 5115392 |
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| Gene Length | 2067 bp |
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| Protein Length | 688 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641624436 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_001751479 |
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| Protein GI | 170723791 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.102852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCGGCT GCCCCCCTGT ATTCGCCCCC TCTCTGCGAG GGACATTCGC CGTGTTGTGC
GGGTCGCTGC TCGCCCCCAT GGCCCTGGCC GCCGAAACTG GCCATGAAAC GCACGAGCAA
GCGCCGCCCG AACTGAGCCC AACGGTGATC ACCGCCATCG CGCCCAGTTC GCCCCTGACG
GTTGTCACCA ACCCCAAAGA CCCGCGCCAG CCCGTGCCGG CCAGCGATGG CGCCGATTAC
CTCAAGACCA TCCCTGGCTT TTCAGCCATC CGCGCCGGTG GCACCAACGG TGACCCGGTG
CTGCGCGGCA TGTTCGGTTC GCGCCTGAAC ATCCTCACCA ACGGCGGTGT GATGCTCGGT
GCCTGCCCGA ACCGCATGGA CGCACCGACC TCTTACATCG CGCCGGAAAC CTATGACCGC
CTCACCGTTA TCAAAGGCCC GCAAAGCGTG ATCTGGGGCC CCGGAGGCTC GGCCGGGACC
ATCCTTTTCG AACGTGAACC GGAAAAATTC GGCACCCTCG GCAGCCGGAT CAACGCCAGC
CTGCTGGCCG GCTCCAACGG CCGCTTCGAC CAGGTGCTCG ACGCCGCCGC AGGCAATAGC
CAGGCTTATG CGCGCTTCGT CGGCAACCAG TCGCGCTCGG ACGACTACCA CGACGGCAAC
GGCGACACCG TGCCTTCGCG CTGGGACAAA TGGAACGGCG ATGTGACCCT GGGCTGGACG
CCCGACCAGG ACACCCTGCT CGAACTCACT GCCGGTAAGG GTGACGGCGA GGCCCGCTAT
GCCGGCCGTG GCATGGACGG CTCGCAGTTC AAGCGCGAAA GCCTGGGCCT GCGCTTTGAA
AAGTCCAACC TCGGCGAGGT GCTCGACAAG GTCGAGGCGC AGGTCTACTA CAACTACACC
GACCACGTGA TGGACAACTA CAGCCTGCGC ACCCCATCGG GCAGCGGCAT GATGGGCATG
CCCATGGTCA GCAATGTCGA CCGCCGCACA ATGGGCGCAC GCATCAAGGC CACCTGGCGC
TGGGCCGACG TGCAACTGAT CAGTGGCATC GACGCACAGA CCAACGAACA TCGCCAGCGT
GGCGGCATGG GCGTTGATGC GCACAAGGGC CAGCCCTGGA CCAAGGATGC CGACTTCCAC
AACTACGGGG CCTTTGGTGA ACTGACCTGG TACGCCACAG GGGTTGACCG GCTGATCACC
GGCGCCCGTC TCGATCGCGC CTCCGCCCGC GACTTCCGGG CTGGCAGCGC TACCGAAGGT
GATACCCGCG CCGATACCCT ACCCAGCGGT TTCGTGCGCT ATGAGCACGA CCTCGCGGCG
GTGCCGGCCA CCACTTACAT CGGCCTTGGC CATGCCCAGC GCTTCCCCGA CTACTGGGAG
CTGTTCTCGC CCAAGCTGGC GCCCTCTGGC GCCGCCAACG CCTTCGACGG CATCAAGCCA
GAAAAGACCA CCCAGCTCGA CTTCGGCATC CAATACCGCG ACGAGCGTCT TGAAGCCTGG
GCTTCGGGTT ACGTCGGGCA GATCCGCGAC TACATCCTGT TCGACTACCG TACCGGCATG
ATGGGCATGA GCACCTCCCA GGCGCAGAAC ATCGACGCCC GCATCATGGG TGGTGAACTC
GGCGCCGCCT ACAAGCTGAC AGAAAACTGG AAGGCCGATG CGACCCTGGC CTACGCCTGG
GGCAAGAACA GCAGTGACGG CAAGGCGCTG CCGCAGATGC CACCACTGGA AAGCCGCATG
GGCCTGACCT ACAGCCGCGA CACCTGGAGC GCCGGGGCCT TGTGGCGGCT GGTAGCTGCA
CAGAACCGCA TCGCCGAAAA CCAGGGCAAT GTGGTCGGCA AGGACTACGA AACAAGCGCC
GGGTTCGGCG TGTTTTCGCT CAATGGCGCC TACAAGGTAA ACAACAACCT CAAGCTCAGC
GCAGGCGTCG ACAACCTGTT CGACAAGGTT TACGCCGAGC ACCTGAACCT GGCAGGGAAC
GCCGGGTTCG GCTACCCGGC TTCCGATCCA CAGCCGGTCA ACGAGCCGGG CAGGACGTTC
TGGACCAAGG TCGATTTCAG CTTCTGA
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| Protein sequence | MSGCPPVFAP SLRGTFAVLC GSLLAPMALA AETGHETHEQ APPELSPTVI TAIAPSSPLT
VVTNPKDPRQ PVPASDGADY LKTIPGFSAI RAGGTNGDPV LRGMFGSRLN ILTNGGVMLG
ACPNRMDAPT SYIAPETYDR LTVIKGPQSV IWGPGGSAGT ILFEREPEKF GTLGSRINAS
LLAGSNGRFD QVLDAAAGNS QAYARFVGNQ SRSDDYHDGN GDTVPSRWDK WNGDVTLGWT
PDQDTLLELT AGKGDGEARY AGRGMDGSQF KRESLGLRFE KSNLGEVLDK VEAQVYYNYT
DHVMDNYSLR TPSGSGMMGM PMVSNVDRRT MGARIKATWR WADVQLISGI DAQTNEHRQR
GGMGVDAHKG QPWTKDADFH NYGAFGELTW YATGVDRLIT GARLDRASAR DFRAGSATEG
DTRADTLPSG FVRYEHDLAA VPATTYIGLG HAQRFPDYWE LFSPKLAPSG AANAFDGIKP
EKTTQLDFGI QYRDERLEAW ASGYVGQIRD YILFDYRTGM MGMSTSQAQN IDARIMGGEL
GAAYKLTENW KADATLAYAW GKNSSDGKAL PQMPPLESRM GLTYSRDTWS AGALWRLVAA
QNRIAENQGN VVGKDYETSA GFGVFSLNGA YKVNNNLKLS AGVDNLFDKV YAEHLNLAGN
AGFGYPASDP QPVNEPGRTF WTKVDFSF
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