Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputW619_1882 |
Symbol | |
ID | 6110833 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida W619 |
Kingdom | Bacteria |
Replicon accession | NC_010501 |
Strand | + |
Start bp | 2105008 |
End bp | 2110242 |
Gene Length | 5235 bp |
Protein Length | 1744 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641621677 |
Product | hypothetical protein |
Protein accession | YP_001748754 |
Protein GI | 170721066 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.44453 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAAGTC AGCCGTTCAC CGATGACTCC ACCAACGCCT TGATTGCCAG CCGCTTGCCC GCCTGGCTGA CCGAACTTCC GTCCGACACC CTCCACAGCT TGCACGAGAG CCAGCAGCGA CAGCAGCAGC TACAGCATCA GTTGCACGAA TGGCTGGCGC GGATCACTCC ACTCGATGCA TTTGCCGAAC CGCTGCTGCA ACAAGCTCTG CAGGCGGAGC ATCAACTTAC CATCGATGTG CGCCGGGCCA CGCTACGGCG CAGGACCCTG CAGCGATATC CCTCGCATGT TGCGCAGGTG CCGGATGGGA TCAAGGAACA GATTTACCAG CACAGCCTGC TGCAATCGGC GTTGCATAAC TTTACCGAGG GTGAAACATT CGCCACCAGC ATCATGCAGG GCTCTGCGGT GCTGGATGCA GCAGGGAATG CGTGCGCGCT CTCGGCCAAG GCATTCTTTA CCCTGTGCCG CTCGCTCGAC CTGGGGGGGC GTTACCAGGC GTACCTGCGC GCGCAGCTGG CACCCGGCGG TGAAGCGGGA AAACAACTGG GCACGCTGAT CGAGGCAGGC TATCGCGCGA GCCTTGAGGC GACGCTGCGG CTGGCACTGG TCAATGGTGA AATACCAAGG CATGCCTATG AACATTGTGC CCCGCTGATT GATCTGATCT CTGCTACACC TCCATCGATC CCTGGGCTGC GGCCAATGCA ATTGCGTGTG TTCGGTCGGC TTGTGCGAGG CGCAGTGGCG TTCGAGATAA CCCATCAGCG TACGACCGGT GACGTGTTCG AGGGAATATT GTGCTGGATC CCTGATGATC CTCAAGGCCC GCTGACCTGG TATACCTCGT GGGCATCGCT GTTCCTGACG GTGGGTAAAC AGTTCCGTTT GCCCGGCTAC GTCGAATTCT TCCAGCGCTT TATCGGTGAA CGCGACCGGG CTGCCTACAC CCGTGCCTTG ACCGAAGCGC TGAACGATAC TGGCGAGGAT GTGCCGGTCC AGCTCGATGG ACGTTACGCA CCAATCGAGC AGCCGTTGTT CGAATACCTG CGCCGGCAAC TGATCGACAC GCTGCTGGAC AACGCCAAAG TGCACGCCAT ACCCACCGCC GAAGTGGACG CGCAGCAACG CGACAGGCGC CTGCATTTCT ACCTCAGCTT TGGCCTGGAT GCGTTGGGCC TGGCGAGCTT TGCGCTACCT GCACTTGCCT TGCCATTGCT GGGAATCACC GCGTTGCAGG TGGCTGACGA TGTTTACGAG GGCTATGCCG ATTGGCGCCT GGGGGACCGG CAGGGTGCGC TGGAGCACAT GTACTCCGTA GCGCAAACCG TGGGCATGAC GGCCGTCAAT GTCGGTGCAG GCGCGGCATC GCACCACCTG ATGGAGGGCG CTCGCGTCGA AGACCTGGTG CCGGTGTACA CGGATGAGCA CACCGTGAAA TTGTGCGACC CCAGGCTGCC AGGCTATGCC GTCCAAGACC GAGGAGCCGT CGGCGAGTTG ATCAGCCTGC AAGGCACAGA ATATGTGCGT ACACCCTTGG CCAGCCATTT GACCTACTTG GAGGCTCAAA CACAGCAGCG TCGCATCCGC CATCCCGTGC GTCCCAACGG TTATGCACCG CTGCTTGAGG GCAGTGAGGG CGCTGGCTGG CAGCATGAAC TGGAGACGCC CCACGAATGG CAGGGCAGCG CTGAGTTGTT TCAGGACCTC GATGCGGGCT GGGCGCACCT CGATGAACAG GCCATACACG CGGTGATGCG GGCAACGGGG TTCAACCAAG ATCAACTGCG CCGCTTGCAC GTAGACCAGG CACAGGCTCC GGCGCGCTTG CGCGATGCGG TGCAGAGGCA GCAGTTGCAC GCTCGGCGGC CCGAGCTGAA AGGGGTGGAC TTCGAGCGAC AGCTACAGGC TCAGCAGCCC CTGCCCGGCG AAGCGCAAAC CCTGCTTCGC CGGGACTTTC CCGGCCTCTC GGTAATGGGC GCGCGTGAGA TCATCGAACA TGCGCCCGAG GACCAGGTGG AGCATATGCT TGCGCACCAG CGTGTGCCGT TGGCCTTGGC CGAGCAGGCG CGGTGGTACG TGCGCGATAC CCGCCTGGAC CGCGCCTGTG CGGGCCTGCT TCAAGCCGCA GCAATCAATC GTGACACCGA GCAACTGGCA TTGGGCCTGA TCGCCGAGCG CGCGCCCTGG CGAGGGGTGC GCATCGAGCT GCGCGGTGAC ACGCTGTCGG GTGAAATGAC TGCGTGGGCC GGAACGCAAG CGGCCAGCGA GGTACTCACC GTGCTTCGAA CTGCCCAGGG TTATCAGGCG CTGGATGCGC GCGCAAACCC GTTGCCGTTG GCCAGAGCTG ATGACAGCCT GTTCCAGGCC CTGTTGCAGC AGCTCGATCC CTGGCAGAAA AGGATGTTGG GCGATGCCAG CGATTCCCCC GAAGCACTGG CTGAGGCCAT GTCGCAGTGG GCCAGCGAAG AGCGCGAGCT CGCCGCTTCA ATTTTGCGCA TGGCGCCAGT CGGCCTTGGT TTCAGGCCGC CGGTACGGCT GGGCGACGGG CGCCTGGGTT ACCCCTTGAG TGGCCGTGGT GAAAGCAGCA ATCGCGCGTT GCGTCGGGGT ATCCAACGGC TGTTCCCCGA TTCCGACGAA AACGCGATGG AGCAGTTTAC GCAGAACGCC CGCACGCTTG GGCTGACACC TTGGAATCAC TACCTGCGCC TGTGTGAAGA GCTGCGCACG CTTGATCAGG CTTTGGGGTT GTGGCGTCGG CAATCGTCGG GGCCGATTCA GTTGATCCGG CGAGCACGCA TGGCTCGGCG GATTCGTCAT GCCTGGCAAA GACGCGCTCG CGACGGTGAC GGCCATCCTG CGTTGATACT GGAGGGATCT GCCTTGGGCA GCCTGCCCGA ACTGCCTGAA CGCGTTCACT TCGACCATGT GACTTCACTG GTACTGCGCA ATCTTCATCT GACGGCGCTC AGCGAGGGCT GGCTCTCCCG TTTCCCCAAT GTACGGCGCC TGGACTTGTC GTCCAACCGG CTGATCTCGA TACCTGATAC CAGCGCCCTA GAGCAACTGG AGCAGCTCGA TCTGCGTAAC AATCGCATTG TCGACATCAG TGAAGCGCAG GCCGGCTGGC TACGCGCCAA CCCCGCCTGC GCGCGCTTGC AGGGCAACCC ACTTTCACCG GCTGCACTCG AGCGGGTTGC CGTCGAGCCT GTAGCAGCCA TCCAGCAGGG GGAGGAGGGC AGCGCTCCGT GGCTCGAAGG GCTGACCGAG CGGGAAGCCG CGCCGCGACG CAGGTATTGG CAGGCGCTTG CTCAAGAACA AGGCAGCGAA GAGTTCTTCG CTTTTCTCAG TGCGTTGCTG CATTCCGAGC GCTTTGCCGT AGAACCCCAA GACTTTCGGC GTCGCGTGGG TGAGCTGCTC TATTGCATGT ACAACCATGC TCATGTTCGA CGGGCAGTAT TCCAGCAGGC TGCCGTGCCA CGGCGCAGCG TGGACCTCGA TGTGCTGCTC GTCAATTTGA AGCTAGCGTT GCGCACAGAA GGCCTGCGTG GTTGGCGCCT TGAGCATGAG TTGCGCGGCC TTGGGCGTGA GTTGTTCAGG CTTGATCAGG TTAACCGCTT TGCTGCACGG CACATCGAAG GTTTGCGCCG GCGCTCTGTG CCATTCAACC CTGGTGAGAT CTACCAGGCC TTTCGGGTTC AGCTTGCAGA GCCATTGGGT ATTTACGGCC AACCGACTTA CCTCAGTTTC AGGCATGTCG AAAGTGTGAC CCCAAACGAC CTGATAGAAG CCGAGGCAGC CGTATACGAG GCCGAAACAG CCGATGCACT CAGCCTGTTC CTGGCGCAAC AGGCGTTCTG GCAGGACCAC GTCAAACTCG CTTATGCCGA TCAGTTTGCA GCCATACGTC AAACCTACGA CGAACGGCGA ACTGCACTTT TCAGGGAGGG CGCACAAGAC CCGGCCCCGA CACGTGCGGC GGAGCAAATT GCAGAGCAAC GCAGGGAGGA GGAGGACGCC CTGACCTTGG CGCTGGCCCG CGGCAACTAT CGGATGTGGT TTCAGCTCGG ACTTGTCCAT GGCCCTGGCT CGCGAGCATT TGCGCATCTG TCCAGTCGCC TTGAAGCCAG CCTGGCAATC TGGCGCGGGC TGCCTGGCGA CCCTGAGTAT GCAGCGCGAT CCAATATGGC GGAGCTCCTG CGGGGTTTCT GGCAGTCGCG TTACCACGAT GAAGAGCCAC CCCTGCGCTC GAGCAAGGAA AGCTGGACTG TCAGTTCGTT ACCTGCGCTG CCCATGGGCA TCGTGTTCGA TCAGGTGCGT AAATTGTCGT TGTGCAACCA GCAGGTTTCG GTCATCGAGC CGGATTTCCT GAGTCGGTTT CCTAATTTGG TAACAATGGA CCTATCGGGC AATCGCCTGC GAGCGCTTGA TGGACTTGAG CATTTGCCGC ACCTGCGCAG TGTGAACCTT GGGGGTAACA TGCTCGATAC AGTGGTGGGC CTGGAGTACT TGACCGAACT GGTCGAGCTG GACCTCAGTG GCAATCAGCT CGATGACCTC CCCGCCGGGC TAGAGCAGTT GGCCCGCCTG ACGCATCTCG ATCTCTCCTT CAATCAGATC GCGGTCCTGG ATGATCGGGT AGGGCAACTG GTCAGCCTTG AAAACCTGCA ATTGAGCGGC AACCTCCTGA GTGCTGTACC GAGCAGTGTC GGCAACCTTG CGCAGTTGAG CACTCTGAAC GTCGGCTCGA ATCGCTTGCT CACCATCCCG GAAAATCTGA ATTACTTGGG TAGACTGACC CAGTTGCACC TGCAGAACAA TTTCATCACC CTCGACGCGC AATCCCAACT GCGGCTGGAG TGGTTTCCCA GGCTTGAAAT TCTCAACCTT GACGCGAACC CGTTGGGGGT GGCGCCGCAG TTACGCTACA ACGTTCATCT TCACTACGTA TCGTTGTGTG CAACAGGCCT GCGCCGTCTT CCTTTGACGT TGTTGCAGCG TTACCCGGAG TTGGTCTTGG ACTTGCGTGG CAATCGCATC GGGGCGTTGA GCGAGGAGGC GTTGATCTGG GTCGAAGCGC ACCCGCACAG GGTCAACCTC GAGCAGAATC AGCTGAGTGA GACGGTCATG GAGCGCGTGC GTGAAGCACT GGCTCGGCTG CGGGCCGAAT GGGAGCGAGC TGCTGCGCCG CAGCCGGGAA CAGGAAGCAG AAGGTCTCAG AACCGCAGGG GCTGA
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Protein sequence | MPSQPFTDDS TNALIASRLP AWLTELPSDT LHSLHESQQR QQQLQHQLHE WLARITPLDA FAEPLLQQAL QAEHQLTIDV RRATLRRRTL QRYPSHVAQV PDGIKEQIYQ HSLLQSALHN FTEGETFATS IMQGSAVLDA AGNACALSAK AFFTLCRSLD LGGRYQAYLR AQLAPGGEAG KQLGTLIEAG YRASLEATLR LALVNGEIPR HAYEHCAPLI DLISATPPSI PGLRPMQLRV FGRLVRGAVA FEITHQRTTG DVFEGILCWI PDDPQGPLTW YTSWASLFLT VGKQFRLPGY VEFFQRFIGE RDRAAYTRAL TEALNDTGED VPVQLDGRYA PIEQPLFEYL RRQLIDTLLD NAKVHAIPTA EVDAQQRDRR LHFYLSFGLD ALGLASFALP ALALPLLGIT ALQVADDVYE GYADWRLGDR QGALEHMYSV AQTVGMTAVN VGAGAASHHL MEGARVEDLV PVYTDEHTVK LCDPRLPGYA VQDRGAVGEL ISLQGTEYVR TPLASHLTYL EAQTQQRRIR HPVRPNGYAP LLEGSEGAGW QHELETPHEW QGSAELFQDL DAGWAHLDEQ AIHAVMRATG FNQDQLRRLH VDQAQAPARL RDAVQRQQLH ARRPELKGVD FERQLQAQQP LPGEAQTLLR RDFPGLSVMG AREIIEHAPE DQVEHMLAHQ RVPLALAEQA RWYVRDTRLD RACAGLLQAA AINRDTEQLA LGLIAERAPW RGVRIELRGD TLSGEMTAWA GTQAASEVLT VLRTAQGYQA LDARANPLPL ARADDSLFQA LLQQLDPWQK RMLGDASDSP EALAEAMSQW ASEERELAAS ILRMAPVGLG FRPPVRLGDG RLGYPLSGRG ESSNRALRRG IQRLFPDSDE NAMEQFTQNA RTLGLTPWNH YLRLCEELRT LDQALGLWRR QSSGPIQLIR RARMARRIRH AWQRRARDGD GHPALILEGS ALGSLPELPE RVHFDHVTSL VLRNLHLTAL SEGWLSRFPN VRRLDLSSNR LISIPDTSAL EQLEQLDLRN NRIVDISEAQ AGWLRANPAC ARLQGNPLSP AALERVAVEP VAAIQQGEEG SAPWLEGLTE REAAPRRRYW QALAQEQGSE EFFAFLSALL HSERFAVEPQ DFRRRVGELL YCMYNHAHVR RAVFQQAAVP RRSVDLDVLL VNLKLALRTE GLRGWRLEHE LRGLGRELFR LDQVNRFAAR HIEGLRRRSV PFNPGEIYQA FRVQLAEPLG IYGQPTYLSF RHVESVTPND LIEAEAAVYE AETADALSLF LAQQAFWQDH VKLAYADQFA AIRQTYDERR TALFREGAQD PAPTRAAEQI AEQRREEEDA LTLALARGNY RMWFQLGLVH GPGSRAFAHL SSRLEASLAI WRGLPGDPEY AARSNMAELL RGFWQSRYHD EEPPLRSSKE SWTVSSLPAL PMGIVFDQVR KLSLCNQQVS VIEPDFLSRF PNLVTMDLSG NRLRALDGLE HLPHLRSVNL GGNMLDTVVG LEYLTELVEL DLSGNQLDDL PAGLEQLARL THLDLSFNQI AVLDDRVGQL VSLENLQLSG NLLSAVPSSV GNLAQLSTLN VGSNRLLTIP ENLNYLGRLT QLHLQNNFIT LDAQSQLRLE WFPRLEILNL DANPLGVAPQ LRYNVHLHYV SLCATGLRRL PLTLLQRYPE LVLDLRGNRI GALSEEALIW VEAHPHRVNL EQNQLSETVM ERVREALARL RAEWERAAAP QPGTGSRRSQ NRRG
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