| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1353 |
|---|
| Symbol | |
|---|
| ID | 6110281 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida W619 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010501 |
|---|
| Strand | + |
|---|
| Start bp | 1471306 |
|---|
| End bp | 1476798 |
|---|
| Gene Length | 5493 bp |
|---|
| Protein Length | 1830 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641621127 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001748227 |
|---|
| Protein GI | 170720539 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4733] Phage-related protein, tail component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.169876 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAGCT CGATCAAGTC AGTCGTCAAG CTCGTCACCG CGCCCATCAA GGCGCTTTAC
GACCCGGTTG GCGCATTCAA GGATGTGTTC GGTGGTGTGC AGGGCATTTT CGCGGGCCTC
ACCGGCGCAG CCAAGGTCTC AGGTGCCAGC AGCTCTGAGC CCAGCTCCCA GACCGTACGC
TCGTCCAAGG CACCGGTGCG CTTCATTCTT GGCCGGGCCA GCACGGGCGG TGTGCTTGCT
TGGGTTCAGG AAGAACCAGG TGACCAGACC GGTGGGGAGT GGTTGCATAT CGTCTACGTC
CTCTCCGAAG GCGCCATCGC AGGCGTCGAC GAAATCTACG TGGACGAGCG GCCGCTGTCC
GATCTGGGCG AGAATGCCAC CTCCGAAGTC ATCATCAATC CGGGCCAGGT AAATGCTTTC
TTGCTGAGCA AGTGCCCAGA CTGGCGCCAG GAGCAGATCG GCCGCGGGCT TTCGTTTGTG
CGTCTGTCGT TCAAATATGA CGCAGAGAAG TTCCCGTCCG GCATTCCTGA TGTGCGCTTC
GTAGTGCGCG GGCGCAGCGA CGTGTATGAC CCACGCAACG GGGCAGTGGG CTATTCGGCC
AACACCGCGC TGCTGATCCT ATGGTATCTG CGCAACCGTT GTGCGATTCC TGACGACGAA
ATCATATTCG ATTCTTTCGC CAGCTCTGCC AACGTCTGTG ATGAGCCCGT GTTTGGCCCG
GATGGTAAAA TTTCGCCTCG CTACTTCGCT GGCGCGGTCA TTGGCGCCGA TGAGAAGCGA
AATACCGTTC TGGACAACCT GCTGTCGGCA TGTGCCGGGA CGCTGATCAG GGTAGGTGGC
CGGTGGTCAC TCCAAGTTGG CGCCTACTAC GGGCCGGCCG ACTTCACCGT GAACGAAGAC
ATGGTGATCG GTACCGTCGA GGGTACGACC GAGGTCAGCA ACAGCGATGC CATTAACACC
ATGCGCGGGA CTTTTGTTGA CCCGGCCCAA GCCTGGGCAG AGACCGACTA CCCGGAGGTC
GCGATACAGG ACTGGATCAC CAAAGACGGT GGTGAGCTCG CTGAGTCGCA GTCGTTTGCC
TATGTGACAG ATGCTTACCT GGCGCAGCGG CTTGCAAACA TCAGCCTCCG CCGCCGTCGC
TCGGGTGGCT CCCTCTCCGT GCCGCTGAAC TTCAATGGTT ACAACTGCCG TCCGGGGCGC
GCAGTCAAAG TCGATCTGCC ATCGCTGAAC ATTCTTGGCG AGTTCATGGT CACCGAATGG
ACCATGGGGG CGGCCGATGC ATGCAAGGTG ACCCTCAAAC CGTACGAGCA AGCCATCTTT
GATGATGCTG TGGGCCAGCC CTACGACCCG CTGGGGTTTA TCAACCTGCC GGTCGGCGGC
CTGGCCGCTG TCACCGGATT GGCCTGGGCG CCGAGCGGCG TGGCCGAGGT CATTCAGGGC
GTACTCAGCT GGACGCCACC GCTGCAGACG GTGCTGAGCT ACACGGTGAC GATCCGCAAG
GGCACTGAGG TCGTGCAGTC CCTTAAGGTC GGCGGTGAGG CCGCCAGCTG CAACATCAAT
GGCCTGACGT CGGGTGTCTA CACCATGAGC GTCATTGCCT TCGGCCCTGG CACACGTTCG
GGCGAGGCGA CCATCAATGT CAACGTGGGT GGTCCTCCGG TGCCCGAAAG CTGCGCCTTC
TATGCGTCGG TGGACACCAT CACGCTGGTG CCAGCCAACC GGCAGAGCAG CCTTAATGGC
GGTACCTATG AATACTTCTA TACCACCAAC CCTTCGGCAC CGATCGCGGA CGCCGTGTAC
TTGGGCCAAG GGTTGACCTT CACCCACACT GGACTGGCAT TCGCCAAGGA GTACTTCTAC
TACGTGCGGT CGGCAAATGC GTACGGGAAG AGTGATTTCC TGTTCGTGCC TGCTGCAACA
TCCAGTGATC CAACCCAGAT GCTGGAAGTC ATTGCGGGTA GGATCACCGA GAGCGAGTTG
GGTCAGGAGC TCACCGACCG CATCGACCTG ATCGACAAAG AGGGCCCGGG CTCCGTCAAC
GAGCGCCTGG GTGAGGTTCG CAGCGACCTG AACCAGCAGA TCGTCGACGT CAACAACTCG
CTGGGGCAAG TGCAGTCCGA GTTGCAGCAG CAGATCGACA GCATCGCCGA TCTGGCCGAC
TCGATGCCGT ACAAGCCCGA CCAGGCCTAC ACAGCTGGCC AAGGTACGTT GGGCGAAGAC
GGCAAGCTGT ACCAGGCCAA GGTTAACGTC CCGGCCGGCA ATCCGCCGCC CAACGCGACC
TACTGGACCG ACATTGGCCA GGCGGTGCAG ACGGCAAACG GTCTCGCCGC GCGCGTCGGT
ACCGTGGAGA CCAGCATCAC AGAGTTGAAC GGCGAGGTTG ATGCCCAGGC CCAGCAGATC
GATGGCTTAC GGACCAGCAT CGACGGGAAG GCTGACGCCT CGACGGTAAG CAGCCTGTCG
AACCGTGTCA CGCAGAACGA GCAGGGCCTT TCCAGCCAAG GCCAGGCCCT CACCGGCGTA
CAGAACAGCC TCAACACCAC CAACCAGAAC GTGACCGCAG CTCAGCAGGC CGCCCAAGCC
GCTGCCGATG CTGCTGGCGC CAAGGGCAAG GTGCTGTACC AGTCGACCGC GCCGGCAGTC
GCGGACCGCC TGGCGCAGAA TCTCTGGATC GACACGACCG GCAATGCCAA CACGCCCAAA
CGCTGGAGCG GCAGCGCTTG GGTGGCCGTG ACCGACAAGG TAGCGACGGA CGCAGCAGCT
GCTGCCGCCA GCGCACTGAG CCAGGTCGCT ACCAAGGCTG ATGCCTCGAC GGTGCAGGCG
CTGACCAACA CCGTGACCCA GCAAGGTCAG GACATTACGG CGGCCGGTCA GGCCATCACC
AGCATCAGCA CGTCGCTCAG CCAGGCGGGC GGTGAGAACC TGCTTTACAA CCCGTCGTTT
GATAAAGCAT CGGCTGCTAG CGCTAACGTC GCTGATGGGT GGTACTGGCG CACGCAAACC
GCCGTCGCTG TAGTGCCGTC GCTTCTGCCA TCGGCCTTGG GAGCTGGCGG CAAACGGCAA
AGACTGGAAG TATCGGGGCT GATAGCCGGT ACCGGCACTC ACTACGTTGA TTTCGTGCCC
GAGTCGGCTC CTGCTGACTT CCGCCCCCCC GTCTATGAGG GGGTCGTAGG CACTGCATCT
ATCTATATCC GTGGAAGCTC GGGGTTGATG GTGCAGATCT ACATGCAGTA CAAGGATGCG
GCCGGGGTGA CGATAGGTAC TCACGGCCCC GTCAACGTCA GCACCTCTCC CGTCGAGTCG
TACAACCGCA TCGTACTCAC CGGACTAGCC GCACCTGCGG GTTCGGTGCG AGTAGACATT
CTCTACCGGA TCAGATCTGC TCCGGGGTCT AGCATCACGG CCGGTTTTGT TGACCTGGAT
AAAGCACAAT ACGAACATAG TCCTGTTGTG ACGGGCTGGC GCGACAATGG GCAGGTCAAT
GCATCCGCTA TTGCGGCCAA CGCCACTGCC ACCACAGCAC TGACCGGCCG GGTAGGCCTC
ACGGAGCAAG GCCTCACTAG CGTTTCGGGC AGCATCACCG AATTGAACAA CACAATTGGC
GATGTTGGTG GTGAGAACCT GTTCTACAAC CCCACTTTCA ATGCTAACGG CTCCGGATCA
GATATCGCCG ATGGCTGGGC CATGGAAGGT TCGGCCGTGA GTGTGGATTC CAGAGTCACT
TCTTGGCTCA ACTCCGGGGA GAAAGCAATC CGAGTTGAGG TTGCAGGCGT GGGGAATGCC
GGCCCCTACA AATCCGTGCG CCCCACTGGT GGAACGCCAG ATCGAAGACC CAAAGTAGCG
GAAGGCCAGA CCTTGACGGC GTCTGTTTAT CTTCGCGGTA CTGCCGGTTT GGGGTTTAGG
TTCTTCCTCC AATGGATCAA CGCTGCGGGT TCTTCGATAA GCGCACCGAA CTCGTTGATG
CTCACCGTCA CACCCGGAGG TGAACGCGTT CAATACAGCG GCGTTGCACC GGCCGGTGCC
GTTAGTTGCT ACGTTTATCT CAGGATTTAT AGTGCTACTG GTGCCGTCAC ATCAGGCCAT
GTCGAAATGG CCAGACCCCA ATTCGAGTAC GGCACACGTG CTACAGGTTG GCGCGATAAC
GGTCAGGTCA ATGCGGCGAC TACTTCGGCG GTTTCGACAG CGGTAGATAG CCTTGGCTCT
ACAGTGACCC AGCAGGGCAA CAGCATCACT AGCGTCTCTA ACCGGACCAC ATCGCTGGAG
AACTCGGTCA ATAGCACGAC TAATGGACTC GCCACCAAGG CCTCGGCCTC GGCGGTGGAC
GCGCTGACCA ACCGTGTTTC GGCAGCGGAG GGGGTCAACA CCAGTCAGTC CAGCAGCATC
ACCGAGCTCA ACAACAACGT TGGCGCAATC CAAGATGCGC TGGGGGCCTC CGGTCTCGAT
CCAGCACCCA ACTGTTTGTG GCAATTTGAT AGCACTACCG AAGGCTGGGT GGCTTCGGGC
GCAACGCTGG CGCAGGGGGC TGGGTTCGTC AAAATCACTT CGACCGGTTC GGATCCGCAG
CTGCACAGCG GTACGGCGGC GACGTTGTCT ATCACAGGCA GTCTCTACAG CCGCGTGCGG
GCGCGCATCA CCCGTCGGGC CGGTGCCGTT ACGGACTGGG ATGGCCAGTT GTTCTACCAG
ACCGCTGGTC ACGGGTTCTC GGGTAGCTAT CGAGCAATCG CGGCTAACCC GAACTTGGCA
GTAGGAGAAT CGGCAGTGGT CGAGTGGGAC ATGGCCAACC TGGCAGCAGG CGGAACGGAC
TGGGTGGACA GCACTATCAC TCGGCTTCGC TTGGACATGG GAGCTACAAG TGGCGGCGCT
TTCGATGTGG ACTGGGTTGC CGTCGGCAGG GTTGCGCCAT CGGCCTCCAG TCGTGCAGTG
GAGTCGTTGA CCTCGACCGT GACTCAGCAA GGCGATGATC TTAGCGCCCA GGCGCAACAG
CTCACCGGCC TGCAGACCTC GGTTGGTAAC AACTCGGCGT CGATCCAGCA GGTAGCCAAT
GCCCAATCCA CGCTCAACGG GAAGATCAAC GCGTCCTACT CGGTGAAGCT CCAGGTCACC
GCTGGTGGAC AGTACGTTGC TACTGGCTTC GGTCTGGGCG TTGAGAACAG CGGGGGAGTG
CTGCAATCGA CGTTCGCGGT AATGGCGGAT CGGTTCGCAG TCCTTAATCC TGCAGGGAAC
GGGTTTATTA GTCCATTCGC GATCCAGAAC GGACAGGTAT TTATTAACGA TGCTCTAATT
TCAAAGCTGT CCGTGCAGAA TGCCATCGTC GGTACAACCA TCGCTTCATC TACCTATTCG
CAATTTGGTG AGCCTCTTAT GACGCTGAAC TTCAATTCGG GAGAAATCAT CATGCGTAAC
TGGAGTCGGC AACTTACCTA TACCAAGATC AATAATGATG GCATCGACGT TGTAGTTGAC
GGTGTCCGCC GAGTTCGGAT GGGGGTGTGG TGA
|
|---|
| Protein sequence | MGSSIKSVVK LVTAPIKALY DPVGAFKDVF GGVQGIFAGL TGAAKVSGAS SSEPSSQTVR
SSKAPVRFIL GRASTGGVLA WVQEEPGDQT GGEWLHIVYV LSEGAIAGVD EIYVDERPLS
DLGENATSEV IINPGQVNAF LLSKCPDWRQ EQIGRGLSFV RLSFKYDAEK FPSGIPDVRF
VVRGRSDVYD PRNGAVGYSA NTALLILWYL RNRCAIPDDE IIFDSFASSA NVCDEPVFGP
DGKISPRYFA GAVIGADEKR NTVLDNLLSA CAGTLIRVGG RWSLQVGAYY GPADFTVNED
MVIGTVEGTT EVSNSDAINT MRGTFVDPAQ AWAETDYPEV AIQDWITKDG GELAESQSFA
YVTDAYLAQR LANISLRRRR SGGSLSVPLN FNGYNCRPGR AVKVDLPSLN ILGEFMVTEW
TMGAADACKV TLKPYEQAIF DDAVGQPYDP LGFINLPVGG LAAVTGLAWA PSGVAEVIQG
VLSWTPPLQT VLSYTVTIRK GTEVVQSLKV GGEAASCNIN GLTSGVYTMS VIAFGPGTRS
GEATINVNVG GPPVPESCAF YASVDTITLV PANRQSSLNG GTYEYFYTTN PSAPIADAVY
LGQGLTFTHT GLAFAKEYFY YVRSANAYGK SDFLFVPAAT SSDPTQMLEV IAGRITESEL
GQELTDRIDL IDKEGPGSVN ERLGEVRSDL NQQIVDVNNS LGQVQSELQQ QIDSIADLAD
SMPYKPDQAY TAGQGTLGED GKLYQAKVNV PAGNPPPNAT YWTDIGQAVQ TANGLAARVG
TVETSITELN GEVDAQAQQI DGLRTSIDGK ADASTVSSLS NRVTQNEQGL SSQGQALTGV
QNSLNTTNQN VTAAQQAAQA AADAAGAKGK VLYQSTAPAV ADRLAQNLWI DTTGNANTPK
RWSGSAWVAV TDKVATDAAA AAASALSQVA TKADASTVQA LTNTVTQQGQ DITAAGQAIT
SISTSLSQAG GENLLYNPSF DKASAASANV ADGWYWRTQT AVAVVPSLLP SALGAGGKRQ
RLEVSGLIAG TGTHYVDFVP ESAPADFRPP VYEGVVGTAS IYIRGSSGLM VQIYMQYKDA
AGVTIGTHGP VNVSTSPVES YNRIVLTGLA APAGSVRVDI LYRIRSAPGS SITAGFVDLD
KAQYEHSPVV TGWRDNGQVN ASAIAANATA TTALTGRVGL TEQGLTSVSG SITELNNTIG
DVGGENLFYN PTFNANGSGS DIADGWAMEG SAVSVDSRVT SWLNSGEKAI RVEVAGVGNA
GPYKSVRPTG GTPDRRPKVA EGQTLTASVY LRGTAGLGFR FFLQWINAAG SSISAPNSLM
LTVTPGGERV QYSGVAPAGA VSCYVYLRIY SATGAVTSGH VEMARPQFEY GTRATGWRDN
GQVNAATTSA VSTAVDSLGS TVTQQGNSIT SVSNRTTSLE NSVNSTTNGL ATKASASAVD
ALTNRVSAAE GVNTSQSSSI TELNNNVGAI QDALGASGLD PAPNCLWQFD STTEGWVASG
ATLAQGAGFV KITSTGSDPQ LHSGTAATLS ITGSLYSRVR ARITRRAGAV TDWDGQLFYQ
TAGHGFSGSY RAIAANPNLA VGESAVVEWD MANLAAGGTD WVDSTITRLR LDMGATSGGA
FDVDWVAVGR VAPSASSRAV ESLTSTVTQQ GDDLSAQAQQ LTGLQTSVGN NSASIQQVAN
AQSTLNGKIN ASYSVKLQVT AGGQYVATGF GLGVENSGGV LQSTFAVMAD RFAVLNPAGN
GFISPFAIQN GQVFINDALI SKLSVQNAIV GTTIASSTYS QFGEPLMTLN FNSGEIIMRN
WSRQLTYTKI NNDGIDVVVD GVRRVRMGVW
|
|---|
| |